Wall clock time and date at job start Mon Mar 30 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48499 * 109.46839 * 239.99775 * 3 2 1 5 5 H 1.48495 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47342 * 119.99920 * 3 2 1 7 7 C 1.37881 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99750 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.75086 * 60.70375 * 9 7 2 11 11 C 1.53462 * 109.75586 * 300.00007 * 9 7 2 12 12 C 1.52525 * 107.57458 * 171.74649 * 11 9 7 13 13 C 1.49402 * 113.32229 * 54.65872 * 12 11 9 14 14 H 1.09001 * 106.36523 * 209.69245 * 13 12 11 15 15 C 1.51195 * 119.62407 * 328.60402 * 13 12 11 16 16 H 1.09005 * 109.77869 * 255.13536 * 15 13 12 17 17 C 1.51557 * 116.22503 * 20.50871 * 15 13 12 18 18 N 1.48202 * 103.09887 * 138.20387 * 15 13 12 19 19 C 1.28414 * 109.82349 * 353.63027 * 18 15 13 20 20 N 1.36732 * 114.41970 * 1.02552 * 19 18 15 21 21 C 1.46499 * 126.42066 * 185.06484 * 20 19 18 22 22 C 1.53000 * 117.49923 * 8.72652 * 21 20 19 23 23 C 1.52996 * 117.50412 * 300.06544 * 21 20 19 24 24 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.83883 * 52.22935 * 11 9 7 26 26 H 1.08994 * 109.88575 * 291.29147 * 11 9 7 27 27 H 1.09003 * 108.71562 * 293.66527 * 12 11 9 28 28 H 1.08996 * 108.71275 * 175.64937 * 12 11 9 29 29 H 1.09004 * 108.80712 * 205.09624 * 17 15 13 30 30 H 1.09000 * 108.71543 * 86.78677 * 17 15 13 31 31 H 1.07997 * 122.78553 * 180.98537 * 19 18 15 32 32 H 1.09010 * 115.55284 * 154.39406 * 21 20 19 33 33 H 1.08996 * 117.49814 * 359.97438 * 22 21 20 34 34 H 1.09009 * 117.49755 * 145.01871 * 22 21 20 35 35 H 1.08999 * 117.50001 * 214.98149 * 23 21 20 36 36 H 1.09002 * 117.49651 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6325 -2.5674 -0.8944 11 6 0.3658 -2.5870 1.2510 12 6 -0.5227 -3.8176 1.1007 13 6 0.2448 -5.0739 0.8465 14 1 -0.4057 -5.7165 0.2532 15 6 1.5484 -5.0118 0.0831 16 1 1.4008 -5.3859 -0.9300 17 6 2.2341 -3.6609 0.0375 18 7 2.4240 -5.9394 0.8377 19 6 1.8241 -6.3360 1.9015 20 7 0.5602 -5.8382 2.0567 21 6 -0.3150 -6.0325 3.2154 22 6 0.2904 -6.6946 4.4548 23 6 -0.6979 -7.4686 3.5788 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2517 -1.6924 1.3307 26 1 0.9886 -2.6869 2.1399 27 1 -1.2099 -3.6536 0.2706 28 1 -1.1049 -3.9422 2.0137 29 1 2.8640 -3.6164 -0.8510 30 1 2.8652 -3.5591 0.9203 31 1 2.2799 -7.0075 2.6141 32 1 -1.0638 -5.2565 3.3745 33 1 1.3396 -6.9861 4.4079 34 1 -0.0604 -6.3544 5.4292 35 1 -1.6984 -7.6372 3.9771 36 1 -0.2983 -8.2689 2.9559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:12 Heat of formation + Delta-G solvation = 44.223011 kcal Electronic energy + Delta-G solvation = -16942.775461 eV Core-core repulsion = 14427.239386 eV Total energy + Delta-G solvation = -2515.536074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.84299 -38.22684 -36.89329 -34.32064 -33.26739 -30.49821 -30.06423 -26.80066 -24.06182 -23.70475 -23.24945 -22.47878 -20.71121 -19.53127 -18.35289 -17.91118 -16.84930 -16.52724 -16.34732 -15.20469 -14.92116 -14.67835 -14.36418 -14.14848 -13.71899 -13.38821 -13.15876 -12.97151 -12.72098 -12.50478 -12.46107 -12.31006 -11.89070 -11.68379 -11.61049 -11.35157 -11.28863 -11.01070 -10.82584 -10.42264 -10.35417 -8.64508 -8.08061 -6.22649 1.40725 1.41843 1.49667 1.67485 2.10126 2.43112 3.00372 3.17080 3.51452 3.69093 3.80059 3.89579 4.06524 4.17553 4.25358 4.40413 4.51617 4.55083 4.71183 4.73064 4.83014 4.97173 5.01392 5.05271 5.07755 5.21116 5.28163 5.30197 5.37560 5.52987 5.64779 5.69356 5.99197 6.13222 6.40029 6.73401 6.86095 7.06307 7.44567 8.95000 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.006711 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.534707 B = 4171.307995 C = 4447.759314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.043 0.957 9 C 0.049 3.951 10 H 0.001 0.999 11 C -0.092 4.092 12 C -0.104 4.104 13 C 0.134 3.866 14 H 0.049 0.951 15 C 0.061 3.939 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.606 5.606 19 C 0.341 3.659 20 N -0.610 5.610 21 C 0.075 3.925 22 C -0.174 4.174 23 C -0.179 4.179 24 H 0.262 0.738 25 H 0.067 0.933 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.212 0.788 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -13.350 8.472 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.062 0.938 9 C 0.030 3.970 10 H 0.019 0.981 11 C -0.130 4.130 12 C -0.142 4.142 13 C 0.029 3.971 14 H 0.067 0.933 15 C -0.049 4.049 16 H 0.098 0.902 17 C -0.114 4.114 18 N -0.333 5.333 19 C 0.044 3.956 20 N -0.331 5.331 21 C -0.030 4.030 22 C -0.211 4.211 23 C -0.218 4.218 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.229 0.771 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.605 -13.286 7.960 15.705 hybrid contribution -0.267 1.343 -0.066 1.371 sum -2.872 -11.943 7.894 14.601 Atomic orbital electron populations 1.69980 1.06906 1.27220 1.51041 1.25666 0.95740 1.02054 0.94706 0.85716 0.78542 0.79337 0.78692 1.19866 1.20442 1.19936 1.21478 0.92719 0.92358 1.50958 0.93842 1.18526 0.93096 0.91558 0.93802 0.98101 1.21295 0.97832 0.96851 0.97056 1.20804 0.97988 0.93573 1.01844 1.20364 0.96560 0.93871 0.86277 0.93330 1.21897 0.90607 0.94373 0.98042 0.90218 1.20971 0.98082 0.92963 0.99398 1.74785 1.29703 1.18586 1.10206 1.25144 0.83056 0.92722 0.94675 1.47849 1.14802 1.52425 1.17978 1.21520 0.97400 0.97392 0.86652 1.23453 0.99919 1.02744 0.95025 1.23535 1.01194 0.94299 1.02817 0.92890 0.91446 0.96343 0.92058 0.91104 0.94429 0.94974 0.77137 0.85707 0.87886 0.86366 0.86591 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 11.32 21.45 0.24 -52.48 16 2 C 0.02 0.97 5.29 84.66 0.45 1.42 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.97 8.58 25.60 0.22 -30.75 16 8 H 0.04 2.52 7.75 -2.91 -0.02 2.49 16 9 C 0.05 2.57 2.12 -11.64 -0.02 2.54 16 10 H 0.00 0.05 8.10 -2.38 -0.02 0.03 16 11 C -0.09 -4.44 5.21 30.59 0.16 -4.28 16 12 C -0.10 -3.96 5.49 29.29 0.16 -3.80 16 13 C 0.13 4.72 3.14 43.24 0.14 4.86 16 14 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 15 C 0.06 2.42 3.93 43.60 0.17 2.59 16 16 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 17 C -0.08 -3.56 4.69 29.87 0.14 -3.42 16 18 N -0.61 -22.33 11.06 -332.75 -3.68 -26.01 16 19 C 0.34 9.93 11.59 180.31 2.09 12.02 16 20 N -0.61 -17.57 3.30 -673.49 -2.22 -19.79 16 21 C 0.07 1.62 6.55 44.99 0.29 1.91 16 22 C -0.17 -2.67 9.99 30.62 0.31 -2.36 16 23 C -0.18 -2.75 10.41 30.62 0.32 -2.44 16 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.07 3.63 5.97 -2.39 -0.01 3.62 16 26 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.36 6.13 -2.39 -0.01 2.34 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.03 1.58 7.92 -2.39 -0.02 1.56 16 31 H 0.21 4.24 6.93 -2.91 -0.02 4.22 16 32 H 0.13 2.73 6.65 -2.38 -0.02 2.71 16 33 H 0.10 1.48 6.80 -2.39 -0.02 1.46 16 34 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.82 283.13 1.84 -62.98 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.05 Total: 10.47 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.42 Total: -21.70 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.66 Total: -98.28 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.82 1.84 -62.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.201 kcal (2) G-P(sol) polarization free energy of solvation -64.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds