Wall clock time and date at job start Mon Mar 30 2020 03:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48494 * 109.46965 * 239.99965 * 3 2 1 5 5 H 1.48503 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47209 * 119.99790 * 3 2 1 7 7 C 1.37884 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.77795 * 60.69325 * 9 7 2 11 11 C 1.53432 * 109.74674 * 299.99958 * 9 7 2 12 12 C 1.52522 * 107.66697 * 172.05203 * 11 9 7 13 13 C 1.49453 * 113.26073 * 54.83398 * 12 11 9 14 14 H 1.08998 * 106.08005 * 209.41841 * 13 12 11 15 15 N 1.46256 * 114.25150 * 93.76721 * 13 12 11 16 16 C 1.28743 * 109.04130 * 220.40067 * 15 13 12 17 17 N 1.36435 * 114.44457 * 0.93420 * 16 15 13 18 18 C 1.46501 * 126.05786 * 185.11492 * 17 16 15 19 19 C 1.53003 * 117.49839 * 8.62906 * 18 17 16 20 20 C 1.53000 * 117.50117 * 300.00524 * 18 17 16 21 21 C 1.48497 * 107.89127 * 5.12496 * 17 16 15 22 22 H 1.09003 * 110.56593 * 234.53749 * 21 17 16 23 23 C 1.51571 * 107.73212 * 114.38836 * 21 17 16 24 24 H 0.96998 * 120.00076 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.81815 * 52.51178 * 11 9 7 26 26 H 1.08998 * 109.87379 * 291.62682 * 11 9 7 27 27 H 1.09001 * 108.72424 * 293.86444 * 12 11 9 28 28 H 1.08996 * 108.72615 * 175.81716 * 12 11 9 29 29 H 1.08001 * 122.78202 * 180.91137 * 16 15 13 30 30 H 1.09004 * 115.55096 * 154.33253 * 18 17 16 31 31 H 1.09000 * 117.49713 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.50019 * 145.01619 * 19 18 17 33 33 H 1.09001 * 117.50009 * 214.97678 * 20 18 17 34 34 H 1.09000 * 117.49727 * 359.97438 * 20 18 17 35 35 H 1.09004 * 108.81286 * 90.23420 * 23 21 17 36 36 H 1.08997 * 108.81495 * 331.94919 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6321 -2.5677 -0.8941 11 6 0.3660 -2.5868 1.2508 12 6 -0.5183 -3.8210 1.1064 13 6 0.2554 -5.0760 0.8613 14 1 -0.3969 -5.7231 0.2749 15 7 0.5687 -5.8347 2.0717 16 6 1.7703 -6.2885 1.9837 17 7 2.4228 -5.9402 0.8373 18 6 3.7518 -6.4009 0.4275 19 6 4.4005 -7.5123 1.2552 20 6 4.9273 -6.0791 1.3525 21 6 1.5475 -5.0112 0.0784 22 1 1.3868 -5.3785 -0.9352 23 6 2.2345 -3.6608 0.0358 24 1 -0.4850 0.8400 0.0004 25 1 -0.2549 -1.6942 1.3274 26 1 0.9893 -2.6806 2.1401 27 1 -1.2042 -3.6646 0.2739 28 1 -1.1017 -3.9422 2.0191 29 1 2.2244 -6.8945 2.7538 30 1 3.9404 -6.3970 -0.6460 31 1 3.8386 -7.9004 2.1048 32 1 5.0159 -8.2399 0.7262 33 1 5.8894 -5.8639 0.8874 34 1 4.7120 -5.5242 2.2656 35 1 2.8647 -3.6149 -0.8523 36 1 2.8663 -3.5598 0.9182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:31 Heat of formation + Delta-G solvation = 59.997957 kcal Electronic energy + Delta-G solvation = -16969.355032 eV Core-core repulsion = 14454.503011 eV Total energy + Delta-G solvation = -2514.852021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41963 -37.10457 -35.25647 -32.23661 -31.79567 -28.97801 -28.37738 -24.81470 -22.79981 -22.41438 -21.91160 -20.92882 -19.40978 -17.91617 -16.85221 -16.23240 -15.30744 -14.90595 -14.58089 -13.91370 -13.43596 -13.19128 -12.97585 -12.36188 -11.99310 -11.79915 -11.74065 -11.51955 -11.21149 -10.93044 -10.75001 -10.59340 -10.53785 -10.39773 -9.89859 -9.74715 -9.56126 -9.40767 -9.03570 -8.57289 -8.27978 -7.31219 -5.94866 -4.01751 2.89784 3.23473 3.33112 3.37970 3.40442 3.88187 4.45564 4.71879 4.82835 4.91318 4.94847 5.19631 5.33851 5.45751 5.53804 5.61028 5.84786 5.90100 6.01377 6.03977 6.15967 6.31536 6.39731 6.57774 6.74669 6.77619 6.91303 7.04316 7.16956 7.32338 7.53413 7.78673 7.91377 8.03992 8.18260 8.36514 8.49859 9.01220 9.62385 11.10279 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.007588 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.347060 B = 3689.084874 C = 4353.401518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.026 0.974 11 C -0.107 4.107 12 C -0.094 4.094 13 C 0.069 3.931 14 H 0.050 0.950 15 N -0.563 5.563 16 C 0.331 3.669 17 N -0.620 5.620 18 C 0.114 3.886 19 C -0.191 4.191 20 C -0.198 4.198 21 C 0.129 3.871 22 H 0.070 0.930 23 C -0.108 4.108 24 H 0.260 0.740 25 H 0.095 0.905 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.172 0.828 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.089 -12.513 1.054 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.044 0.956 11 C -0.145 4.145 12 C -0.132 4.132 13 C -0.042 4.042 14 H 0.068 0.932 15 N -0.289 5.289 16 C 0.033 3.967 17 N -0.341 5.341 18 C 0.007 3.993 19 C -0.229 4.229 20 C -0.237 4.237 21 C 0.026 3.974 22 H 0.088 0.912 23 C -0.147 4.147 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.188 0.812 30 H 0.142 0.858 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.138 -12.357 1.512 13.468 hybrid contribution 1.193 0.913 -0.605 1.620 sum 6.332 -11.444 0.907 13.110 Atomic orbital electron populations 1.69870 1.05808 1.26433 1.50642 1.24946 0.94833 0.98909 0.95200 0.86708 0.79650 0.83397 0.78522 1.20377 1.21280 1.20378 1.21121 0.92717 0.90630 1.50545 0.92981 1.18539 0.92610 0.90905 0.94450 0.95598 1.21578 0.98364 0.96278 0.98233 1.20620 0.98082 0.93585 1.00951 1.20973 0.94996 0.97174 0.91010 0.93235 1.74562 1.12824 1.18726 1.22774 1.24479 0.89965 0.93789 0.88476 1.48298 1.16041 1.48567 1.21164 1.21200 0.81150 1.00494 0.96427 1.23332 1.04016 0.92377 1.03165 1.23500 0.99203 0.97730 1.03301 1.21739 0.89934 0.90949 0.94783 0.91196 1.21542 0.99426 0.93031 1.00694 0.92985 0.88679 0.95167 0.92520 0.92613 0.81168 0.85844 0.88651 0.88121 0.88331 0.88471 0.93667 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 2 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.12 8.58 -34.44 -0.30 -14.42 16 8 H 0.05 1.42 7.75 -52.49 -0.41 1.02 16 9 C 0.05 1.34 2.11 -91.93 -0.19 1.15 16 10 H 0.03 0.70 8.10 -51.93 -0.42 0.27 16 11 C -0.11 -2.60 5.20 -26.75 -0.14 -2.74 16 12 C -0.09 -2.00 5.55 -28.73 -0.16 -2.16 16 13 C 0.07 1.33 3.25 -70.71 -0.23 1.10 16 14 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 15 N -0.56 -10.56 11.42 -58.83 -0.67 -11.23 16 16 C 0.33 5.19 11.57 -90.53 -1.05 4.15 16 17 N -0.62 -9.58 2.88 -161.52 -0.46 -10.04 16 18 C 0.11 1.39 6.77 -67.93 -0.46 0.93 16 19 C -0.19 -1.79 9.98 -26.73 -0.27 -2.06 16 20 C -0.20 -2.17 10.39 -26.73 -0.28 -2.45 16 21 C 0.13 2.36 3.70 -68.45 -0.25 2.11 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 23 C -0.11 -2.28 4.49 -27.84 -0.13 -2.40 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.09 2.58 5.98 -51.93 -0.31 2.27 16 26 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 29 H 0.17 2.06 6.89 -52.49 -0.36 1.70 16 30 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 0.85 6.76 -51.93 -0.35 0.50 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.19 7.92 -51.93 -0.41 0.78 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -29.48 286.30 -10.37 -39.85 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.61 Total: 0.69 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.54 Total: -15.16 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.51 Total: -46.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.48 -10.37 -39.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.850 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds