Wall clock time and date at job start Mon Mar 30 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48494 * 109.46965 * 239.99965 * 3 2 1 5 5 H 1.48503 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47209 * 119.99790 * 3 2 1 7 7 C 1.37884 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.77795 * 60.69325 * 9 7 2 11 11 C 1.53432 * 109.74674 * 299.99958 * 9 7 2 12 12 C 1.52522 * 107.66697 * 172.05203 * 11 9 7 13 13 C 1.49453 * 113.26073 * 54.83398 * 12 11 9 14 14 H 1.08998 * 106.08005 * 209.41841 * 13 12 11 15 15 N 1.46256 * 114.25150 * 93.76721 * 13 12 11 16 16 C 1.28743 * 109.04130 * 220.40067 * 15 13 12 17 17 N 1.36435 * 114.44457 * 0.93420 * 16 15 13 18 18 C 1.46501 * 126.05786 * 185.11492 * 17 16 15 19 19 C 1.53003 * 117.49839 * 8.62906 * 18 17 16 20 20 C 1.53000 * 117.50117 * 300.00524 * 18 17 16 21 21 C 1.48497 * 107.89127 * 5.12496 * 17 16 15 22 22 H 1.09003 * 110.56593 * 234.53749 * 21 17 16 23 23 C 1.51571 * 107.73212 * 114.38836 * 21 17 16 24 24 H 0.96998 * 120.00076 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.81815 * 52.51178 * 11 9 7 26 26 H 1.08998 * 109.87379 * 291.62682 * 11 9 7 27 27 H 1.09001 * 108.72424 * 293.86444 * 12 11 9 28 28 H 1.08996 * 108.72615 * 175.81716 * 12 11 9 29 29 H 1.08001 * 122.78202 * 180.91137 * 16 15 13 30 30 H 1.09004 * 115.55096 * 154.33253 * 18 17 16 31 31 H 1.09000 * 117.49713 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.50019 * 145.01619 * 19 18 17 33 33 H 1.09001 * 117.50009 * 214.97678 * 20 18 17 34 34 H 1.09000 * 117.49727 * 359.97438 * 20 18 17 35 35 H 1.09004 * 108.81286 * 90.23420 * 23 21 17 36 36 H 1.08997 * 108.81495 * 331.94919 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6321 -2.5677 -0.8941 11 6 0.3660 -2.5868 1.2508 12 6 -0.5183 -3.8210 1.1064 13 6 0.2554 -5.0760 0.8613 14 1 -0.3969 -5.7231 0.2749 15 7 0.5687 -5.8347 2.0717 16 6 1.7703 -6.2885 1.9837 17 7 2.4228 -5.9402 0.8373 18 6 3.7518 -6.4009 0.4275 19 6 4.4005 -7.5123 1.2552 20 6 4.9273 -6.0791 1.3525 21 6 1.5475 -5.0112 0.0784 22 1 1.3868 -5.3785 -0.9352 23 6 2.2345 -3.6608 0.0358 24 1 -0.4850 0.8400 0.0004 25 1 -0.2549 -1.6942 1.3274 26 1 0.9893 -2.6806 2.1401 27 1 -1.2042 -3.6646 0.2739 28 1 -1.1017 -3.9422 2.0191 29 1 2.2244 -6.8945 2.7538 30 1 3.9404 -6.3970 -0.6460 31 1 3.8386 -7.9004 2.1048 32 1 5.0159 -8.2399 0.7262 33 1 5.8894 -5.8639 0.8874 34 1 4.7120 -5.5242 2.2656 35 1 2.8647 -3.6149 -0.8523 36 1 2.8663 -3.5598 0.9182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:30 Heat of formation + Delta-G solvation = 43.519624 kcal Electronic energy + Delta-G solvation = -16970.069586 eV Core-core repulsion = 14454.503011 eV Total energy + Delta-G solvation = -2515.566576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.80276 -38.25514 -36.88428 -34.19649 -33.26217 -30.69066 -29.92761 -26.80862 -23.91137 -23.62677 -23.20379 -22.67095 -20.70502 -19.59061 -18.35483 -17.89442 -16.74185 -16.54547 -16.08281 -15.39657 -14.99094 -14.79286 -14.25836 -14.00630 -13.65435 -13.26755 -13.23903 -12.96367 -12.78718 -12.51711 -12.39251 -12.31590 -12.07742 -11.66829 -11.52374 -11.38261 -11.22714 -11.00994 -10.81093 -10.43639 -10.35679 -8.62918 -8.06819 -6.22598 1.40649 1.41883 1.49510 1.66352 2.05704 2.43073 3.01121 3.18188 3.56578 3.70505 3.87512 3.94034 4.07356 4.14559 4.31952 4.37171 4.49458 4.58939 4.71949 4.74619 4.83832 4.95886 5.04174 5.06327 5.12715 5.19325 5.27560 5.31401 5.40540 5.56967 5.61789 5.67452 5.98678 6.13750 6.39011 6.74480 6.88008 7.07095 7.45068 8.95979 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.007588 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.347060 B = 3689.084874 C = 4353.401518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.051 3.949 10 H 0.001 0.999 11 C -0.095 4.095 12 C -0.085 4.085 13 C 0.067 3.933 14 H 0.054 0.946 15 N -0.601 5.601 16 C 0.340 3.660 17 N -0.615 5.615 18 C 0.083 3.917 19 C -0.159 4.159 20 C -0.202 4.202 21 C 0.130 3.870 22 H 0.084 0.916 23 C -0.091 4.091 24 H 0.261 0.739 25 H 0.063 0.937 26 H 0.014 0.986 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.210 0.790 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 -14.056 1.139 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.032 3.968 10 H 0.019 0.981 11 C -0.133 4.133 12 C -0.124 4.124 13 C -0.044 4.044 14 H 0.072 0.928 15 N -0.329 5.329 16 C 0.044 3.956 17 N -0.335 5.335 18 C -0.022 4.022 19 C -0.196 4.196 20 C -0.241 4.241 21 C 0.025 3.975 22 H 0.102 0.898 23 C -0.129 4.129 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.227 0.773 30 H 0.150 0.850 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.933 -13.923 1.589 15.634 hybrid contribution 0.704 1.388 -0.625 1.677 sum 7.636 -12.535 0.964 14.709 Atomic orbital electron populations 1.70008 1.07115 1.27192 1.51057 1.25721 0.95672 1.02273 0.94808 0.85709 0.78488 0.79286 0.78764 1.19479 1.20819 1.19955 1.21491 0.92844 0.92168 1.50803 0.93265 1.18475 0.93046 0.91882 0.93359 0.98075 1.21332 0.97998 0.96620 0.97337 1.20478 0.97730 0.93345 1.00805 1.20832 0.95473 0.96055 0.92026 0.92753 1.74550 1.14832 1.20661 1.22812 1.25092 0.89109 0.92652 0.88782 1.48301 1.17015 1.47503 1.20639 1.21571 0.79783 1.03347 0.97506 1.23443 1.02306 0.91634 1.02255 1.23506 0.99101 0.99296 1.02236 1.21539 0.89930 0.90136 0.95865 0.89827 1.21288 0.98264 0.93328 1.00063 0.92986 0.91833 0.96665 0.92815 0.92679 0.77330 0.84972 0.87716 0.85608 0.87123 0.90031 0.93316 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.63 11.32 21.45 0.24 -53.39 16 2 C 0.01 0.79 5.29 84.66 0.45 1.24 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.12 8.58 25.60 0.22 -29.90 16 8 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 9 C 0.05 2.63 2.11 -11.65 -0.02 2.61 16 10 H 0.00 0.06 8.10 -2.39 -0.02 0.04 16 11 C -0.09 -4.80 5.20 30.58 0.16 -4.64 16 12 C -0.09 -3.70 5.55 29.30 0.16 -3.54 16 13 C 0.07 2.56 3.25 43.32 0.14 2.70 16 14 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 15 N -0.60 -21.80 11.42 -340.04 -3.88 -25.69 16 16 C 0.34 9.88 11.57 180.31 2.09 11.97 16 17 N -0.61 -17.70 2.88 -664.93 -1.91 -19.61 16 18 C 0.08 1.77 6.77 44.99 0.30 2.08 16 19 C -0.16 -2.30 9.98 30.60 0.31 -1.99 16 20 C -0.20 -3.87 10.39 30.60 0.32 -3.55 16 21 C 0.13 4.63 3.70 43.55 0.16 4.79 16 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 23 C -0.09 -3.83 4.49 29.88 0.13 -3.69 16 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.06 3.61 5.98 -2.39 -0.01 3.60 16 26 H 0.01 0.77 8.11 -2.39 -0.02 0.75 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 2.35 8.08 -2.39 -0.02 2.33 16 29 H 0.21 4.25 6.89 -2.91 -0.02 4.23 16 30 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.10 1.37 6.76 -2.39 -0.02 1.35 16 32 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.04 1.76 7.92 -2.39 -0.02 1.74 16 Total: -1.00 -64.60 286.30 1.93 -62.67 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.05 Total: 11.75 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.41 Total: -21.94 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -5.55 Total: -98.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.60 1.93 -62.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.192 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds