Wall clock time and date at job start Mon Mar 30 2020 03:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34662 * 125.81872 * 2 1 4 4 N 1.37458 * 106.97033 * 180.26330 * 3 2 1 5 5 C 1.38563 * 144.86923 * 180.73913 * 4 3 2 6 6 C 1.32877 * 108.50775 * 179.26211 * 5 4 3 7 7 C 1.50696 * 125.80510 * 179.75944 * 6 5 4 8 8 H 1.08993 * 109.47196 * 155.22519 * 7 6 5 9 9 N 1.46908 * 109.46824 * 35.22824 * 7 6 5 10 10 C 1.50698 * 109.47187 * 275.23111 * 7 6 5 11 11 H 1.07998 * 119.99696 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00106 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99856 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 119.99841 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47074 * 0.02562 * 14 12 10 16 16 H 1.48491 * 109.46925 * 120.00588 * 14 12 10 17 17 H 1.48504 * 109.46731 * 240.00441 * 14 12 10 18 18 N 1.38324 * 108.39893 * 359.73861 * 6 5 4 19 19 C 1.46498 * 126.12940 * 180.02562 * 18 6 5 20 20 C 1.36125 * 107.11126 * 359.57464 * 4 3 2 21 21 N 1.31708 * 108.27307 * 0.43276 * 20 4 3 22 22 H 1.09000 * 109.47125 * 90.00737 * 1 2 3 23 23 H 1.09004 * 109.47209 * 210.00065 * 1 2 3 24 24 H 1.08992 * 109.47592 * 330.00290 * 1 2 3 25 25 H 1.07995 * 126.51570 * 359.97438 * 3 2 1 26 26 H 1.08004 * 125.74790 * 358.98366 * 5 4 3 27 27 H 1.00893 * 110.99927 * 294.72593 * 9 7 6 28 28 H 1.00896 * 110.99784 * 58.68257 * 9 7 6 29 29 H 0.96999 * 119.99501 * 179.97438 * 13 12 10 30 30 H 1.09008 * 109.46980 * 275.18337 * 19 18 6 31 31 H 1.09008 * 109.47119 * 35.17957 * 19 18 6 32 32 H 1.08996 * 109.47322 * 155.18453 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2950 1.0919 0.0000 4 7 3.5959 0.6479 -0.0060 5 6 4.9259 1.0363 0.0003 6 6 5.6840 -0.0550 0.0006 7 6 7.1908 -0.0818 0.0015 8 1 7.5372 -1.0212 0.4322 9 7 7.6999 1.0406 0.8010 10 6 7.6962 0.0390 -1.4130 11 1 6.9963 0.1260 -2.2309 12 6 9.0521 0.0384 -1.6630 13 7 9.9043 -0.0680 -0.6671 14 14 9.6785 0.1874 -3.4166 15 1 8.5257 0.2927 -4.3468 16 1 10.5247 1.4015 -3.5384 17 1 10.4830 -1.0131 -3.7585 18 7 4.8552 -1.1624 0.0005 19 6 5.2849 -2.5630 0.0012 20 6 3.5547 -0.7127 0.0001 21 7 2.2921 -1.0876 0.0000 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5137 25 1 1.9673 2.1210 -0.0004 26 1 5.2859 2.0546 0.0001 27 1 7.4649 1.9242 0.3745 28 1 7.3574 0.9941 1.7489 29 1 10.8582 -0.0688 -0.8431 30 1 5.4809 -2.8834 -1.0221 31 1 6.1941 -2.6638 0.5940 32 1 4.4995 -3.1838 0.4322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:27 Heat of formation + Delta-G solvation = 105.099929 kcal Electronic energy + Delta-G solvation = -16312.977732 eV Core-core repulsion = 13696.541135 eV Total energy + Delta-G solvation = -2616.436597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.20589 -39.81046 -36.31710 -35.06375 -33.60079 -31.70079 -30.49485 -28.59795 -27.37365 -26.81590 -24.17344 -22.07746 -21.35811 -20.65562 -18.65313 -17.86573 -17.32917 -16.92374 -16.70326 -15.98971 -15.34211 -15.04728 -14.96888 -14.46333 -14.29262 -13.86763 -13.86312 -13.23818 -13.20784 -13.01176 -12.78580 -12.73977 -12.18600 -11.91700 -11.78124 -11.22563 -10.96958 -10.61095 -9.31680 -9.00549 -8.51663 -8.05577 -6.27821 0.84158 1.26168 1.42176 1.45681 1.50243 1.56276 2.06066 2.12699 2.45609 3.19627 3.40542 3.67923 4.09100 4.18956 4.28528 4.36607 4.42932 4.54406 4.61050 4.69150 4.90361 4.94505 4.99033 5.15640 5.32405 5.58314 5.68967 5.76665 5.99035 6.24004 6.44848 6.55593 6.96118 7.12583 7.15147 7.45512 8.97491 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.006533 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.971649 B = 4284.593546 C = 4294.958755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.032 3.968 3 C -0.111 4.111 4 N -0.404 5.404 5 C -0.088 4.088 6 C 0.089 3.911 7 C 0.298 3.702 8 H 0.035 0.965 9 N -0.806 5.806 10 C -0.546 4.546 11 H 0.042 0.958 12 C 0.048 3.952 13 N -0.870 5.870 14 Si 0.946 3.054 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.483 5.483 19 C 0.100 3.900 20 C 0.351 3.649 21 N -0.546 5.546 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.201 0.799 26 H 0.190 0.810 27 H 0.331 0.669 28 H 0.318 0.682 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 1.153 2.114 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.241 4.241 4 N -0.082 5.082 5 C -0.211 4.211 6 C -0.022 4.022 7 C 0.186 3.814 8 H 0.053 0.947 9 N -0.333 5.333 10 C -0.585 4.585 11 H 0.060 0.940 12 C -0.157 4.157 13 N -0.504 5.504 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.181 5.181 19 C -0.041 4.041 20 C 0.003 3.997 21 N -0.278 5.278 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.115 0.885 25 H 0.218 0.782 26 H 0.207 0.793 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.584 -0.025 2.036 10.778 hybrid contribution -0.027 1.075 -0.857 1.375 sum -10.611 1.049 1.179 10.727 Atomic orbital electron populations 1.20118 0.84058 1.03867 1.03272 1.21374 0.97922 0.86556 1.04004 1.22329 0.78531 1.01727 1.21516 1.43758 1.06037 1.08799 1.49561 1.21217 0.78419 1.00419 1.21020 1.22924 0.97072 0.83235 0.98955 1.17556 0.77213 0.92624 0.94031 0.94696 1.59096 1.65595 1.04826 1.03776 1.20920 0.91684 1.54949 0.90912 0.94014 1.25501 0.96930 0.93667 0.99635 1.70184 1.01995 1.46629 1.31637 0.85721 0.78106 0.77804 0.81131 1.20284 1.20474 1.20487 1.43696 0.99547 1.08126 1.66698 1.21956 1.02046 0.76222 1.03851 1.20914 0.88628 0.81679 1.08512 1.70115 0.95121 1.31014 1.31510 0.90246 0.91169 0.88494 0.78226 0.79258 0.85589 0.87033 0.93073 0.90988 0.88870 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.42 71.23 0.74 -0.45 16 2 C 0.03 1.05 7.08 41.38 0.29 1.34 16 3 C -0.11 -3.61 11.94 82.99 0.99 -2.62 16 4 N -0.40 -15.66 3.53 -356.29 -1.26 -16.92 16 5 C -0.09 -3.38 11.25 82.45 0.93 -2.45 16 6 C 0.09 3.67 5.83 40.36 0.24 3.91 16 7 C 0.30 13.50 2.91 43.42 0.13 13.63 16 8 H 0.04 1.73 7.12 -2.39 -0.02 1.71 16 9 N -0.81 -33.86 8.36 -174.95 -1.46 -35.33 16 10 C -0.55 -27.85 8.66 25.60 0.22 -27.63 16 11 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 12 C 0.05 2.48 5.39 84.66 0.46 2.94 16 13 N -0.87 -46.80 12.77 21.45 0.27 -46.53 16 14 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 N -0.48 -19.30 3.25 -535.51 -1.74 -21.03 16 19 C 0.10 3.25 10.94 127.77 1.40 4.65 16 20 C 0.35 14.51 9.17 260.55 2.39 16.90 16 21 N -0.55 -21.70 11.30 -186.24 -2.10 -23.81 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.20 4.86 8.06 -2.91 -0.02 4.83 16 26 H 0.19 6.36 7.53 -2.91 -0.02 6.34 16 27 H 0.33 13.17 8.18 -89.70 -0.73 12.43 16 28 H 0.32 11.77 9.02 -89.70 -0.81 10.97 16 29 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.09 2.88 7.23 -2.38 -0.02 2.87 16 32 H 0.09 2.72 8.13 -2.39 -0.02 2.70 16 Total: -1.00 -63.80 277.53 3.13 -60.68 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.39 Total: 29.25 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 7.78 Total: 10.22 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -6.29 Total: -143.62 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -63.80 3.13 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.776 kcal (2) G-P(sol) polarization free energy of solvation -63.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds