Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47149 * 111.00172 * 2 1 4 4 C 1.52998 * 108.55561 * 165.35986 * 3 2 1 5 5 C 1.50408 * 109.82744 * 50.09419 * 4 3 2 6 6 C 1.41080 * 119.42891 * 163.37737 * 5 4 3 7 7 C 1.41536 * 120.62851 * 359.68271 * 6 5 4 8 8 H 1.08005 * 119.99539 * 0.02562 * 7 6 5 9 9 C 1.40097 * 120.00276 * 179.97438 * 7 6 5 10 10 N 1.30676 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47099 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47263 * 120.00365 * 11 9 7 14 14 H 1.48500 * 109.46953 * 240.00522 * 11 9 7 15 15 N 1.33977 * 118.75079 * 179.70168 * 6 5 4 16 16 C 1.32116 * 120.34888 * 0.08576 * 15 6 5 17 17 N 1.38384 * 119.05276 * 180.08258 * 16 15 6 18 18 N 1.32615 * 121.89261 * 0.05242 * 16 15 6 19 19 C 1.32778 * 121.32773 * 359.96487 * 18 16 15 20 20 C 1.46690 * 110.99787 * 236.83292 * 2 1 3 21 21 H 1.08992 * 109.47459 * 179.21430 * 1 2 3 22 22 H 1.09004 * 109.47040 * 299.21581 * 1 2 3 23 23 H 1.09000 * 109.47033 * 59.21533 * 1 2 3 24 24 H 1.09003 * 109.62264 * 285.09639 * 3 2 1 25 25 H 1.09004 * 109.62068 * 45.64530 * 3 2 1 26 26 H 1.09006 * 109.41857 * 289.98300 * 4 3 2 27 27 H 1.09000 * 109.34664 * 170.16325 * 4 3 2 28 28 H 0.97000 * 119.99936 * 179.97438 * 10 9 7 29 29 H 0.97005 * 119.99827 * 359.97438 * 17 16 15 30 30 H 0.97001 * 120.00035 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.31235 * 296.25023 * 20 2 1 32 32 H 1.09000 * 109.32362 * 55.87262 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9964 1.3737 0.0000 4 6 3.4811 1.3253 0.3666 5 6 4.1847 0.3073 -0.4883 6 6 5.5922 0.3339 -0.5810 7 6 6.3425 1.3109 0.1160 8 1 5.8378 2.0452 0.7264 9 6 7.7397 1.3248 0.0151 10 7 8.3504 0.4360 -0.7230 11 14 8.7299 2.6139 0.9356 12 1 7.8084 3.4969 1.6948 13 1 9.6608 1.9431 1.8783 14 1 9.5077 3.4262 -0.0342 15 7 6.2054 -0.5830 -1.3415 16 6 5.4996 -1.4913 -1.9914 17 7 6.1606 -2.4267 -2.7679 18 7 4.1760 -1.5327 -1.9206 19 6 3.4962 -0.6583 -1.1883 20 6 1.9947 -0.7492 -1.1464 21 1 -0.3634 -1.0275 -0.0141 22 1 -0.3633 0.5016 0.8970 23 1 -0.3633 0.5260 -0.8829 24 1 1.8780 1.8113 -0.9913 25 1 1.4575 1.9727 0.7341 26 1 3.5864 1.0517 1.4165 27 1 3.9259 2.3066 0.2016 28 1 9.3178 0.4459 -0.7932 29 1 7.1286 -2.4091 -2.8295 30 1 5.6561 -3.0996 -3.2513 31 1 1.6991 -1.7948 -1.0598 32 1 1.5852 -0.3338 -2.0672 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = 50.513434 kcal Electronic energy + Delta-G solvation = -16531.113467 eV Core-core repulsion = 13912.309823 eV Total energy + Delta-G solvation = -2618.803645 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38425 -37.18628 -34.38125 -33.18074 -31.79872 -30.99736 -28.34269 -27.26679 -25.69047 -23.05164 -22.31136 -21.02602 -19.20420 -17.72227 -16.43140 -15.61405 -15.17462 -14.77733 -14.50362 -14.35693 -13.64720 -13.34928 -13.07212 -12.82644 -12.43951 -12.10588 -11.74070 -11.38071 -11.31836 -11.16485 -10.89825 -10.73158 -10.47910 -10.03453 -9.74749 -9.07700 -8.91121 -8.41816 -7.94276 -7.27548 -6.71987 -6.37433 -4.70000 2.84462 2.96369 3.07458 3.11636 3.32149 3.91353 4.27530 4.69350 4.83260 5.37002 5.45461 5.61289 5.73528 5.84283 5.93575 6.00714 6.05119 6.09446 6.19863 6.52152 6.62595 6.72831 6.86268 6.97862 7.12598 7.34760 7.44794 7.60689 7.77713 8.06684 8.35541 8.53640 8.73887 8.93770 9.27786 10.21882 10.42480 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.009457 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.590388 B = 2960.210144 C = 4019.864244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.055 3.945 4 C -0.032 4.032 5 C -0.304 4.304 6 C 0.305 3.695 7 C -0.421 4.421 8 H 0.091 0.909 9 C 0.070 3.930 10 N -0.708 5.708 11 Si 0.907 3.093 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.273 1.273 15 N -0.562 5.562 16 C 0.553 3.447 17 N -0.845 5.845 18 N -0.664 5.664 19 C 0.190 3.810 20 C 0.119 3.881 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.020 0.980 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.272 0.728 29 H 0.402 0.598 30 H 0.393 0.607 31 H 0.083 0.917 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 1.145 0.467 6.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.261 5.261 3 C -0.073 4.073 4 C -0.071 4.071 5 C -0.315 4.315 6 C 0.173 3.827 7 C -0.455 4.455 8 H 0.109 0.891 9 C -0.156 4.156 10 N -0.330 5.330 11 Si 0.731 3.269 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.198 1.198 15 N -0.291 5.291 16 C 0.193 3.807 17 N -0.395 5.395 18 N -0.396 5.396 19 C 0.052 3.948 20 C -0.010 4.010 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.221 0.779 31 H 0.101 0.899 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.717 0.218 0.315 5.730 hybrid contribution 0.015 1.165 -0.150 1.175 sum -5.702 1.384 0.165 5.870 Atomic orbital electron populations 1.22350 0.87964 1.01637 1.00212 1.62184 1.06693 1.14713 1.42528 1.22245 0.97344 0.88397 0.99326 1.19873 0.91112 0.97661 0.98465 1.20375 0.95736 1.04604 1.10783 1.18413 0.87488 0.89239 0.87555 1.19687 0.90894 1.11062 1.23855 0.89120 1.26120 0.98711 0.96087 0.94700 1.70117 1.09627 1.27383 1.25840 0.86278 0.79893 0.80863 0.79867 1.18209 1.19806 1.19848 1.68978 1.36458 1.07641 1.16010 1.19398 0.85001 0.88048 0.88296 1.41425 1.08869 1.34596 1.54613 1.67269 1.08313 1.32578 1.31469 1.19856 0.93345 0.90088 0.91486 1.20523 0.91285 0.98585 0.90599 0.91678 0.91522 0.96101 0.95112 0.91402 0.92243 0.91719 0.91686 0.76846 0.77907 0.89870 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.54 60.07 0.57 0.93 16 2 N -0.54 -9.46 4.93 -244.46 -1.21 -10.66 16 3 C 0.05 0.95 5.58 -3.69 -0.02 0.93 16 4 C -0.03 -0.67 5.11 -28.03 -0.14 -0.81 16 5 C -0.30 -7.60 5.83 -103.88 -0.61 -8.20 16 6 C 0.31 8.43 6.58 -84.60 -0.56 7.87 16 7 C -0.42 -11.04 8.70 -37.63 -0.33 -11.37 16 8 H 0.09 2.20 6.35 -52.48 -0.33 1.87 16 9 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 10 N -0.71 -18.53 11.52 55.55 0.64 -17.89 16 11 Si 0.91 18.21 29.56 -169.99 -5.02 13.19 16 12 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 15 N -0.56 -15.81 8.07 -11.86 -0.10 -15.90 16 16 C 0.55 14.28 8.66 -323.17 -2.80 11.48 16 17 N -0.85 -17.55 9.07 29.71 0.27 -17.28 16 18 N -0.66 -16.78 10.34 -10.40 -0.11 -16.89 16 19 C 0.19 4.60 6.69 -82.48 -0.55 4.05 16 20 C 0.12 2.32 5.51 -5.20 -0.03 2.29 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 23 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 25 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.30 7.07 -51.93 -0.37 0.94 16 28 H 0.27 6.41 8.29 -40.82 -0.34 6.08 16 29 H 0.40 7.86 8.94 -40.82 -0.36 7.50 16 30 H 0.39 6.99 8.94 -40.82 -0.37 6.63 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 LS Contribution 266.97 15.07 4.02 4.02 Total: -1.00 -30.76 266.97 -9.99 -40.75 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -3.93 Total: 11.83 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -4.56 Total: 8.83 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -0.50 Total: -78.63 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.76 -9.99 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.263 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds