Wall clock time and date at job start Mon Mar 30 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47149 * 111.00172 * 2 1 4 4 C 1.52998 * 108.55561 * 165.35986 * 3 2 1 5 5 C 1.50408 * 109.82744 * 50.09419 * 4 3 2 6 6 C 1.41080 * 119.42891 * 163.37737 * 5 4 3 7 7 C 1.41536 * 120.62851 * 359.68271 * 6 5 4 8 8 H 1.08005 * 119.99539 * 0.02562 * 7 6 5 9 9 C 1.40097 * 120.00276 * 179.97438 * 7 6 5 10 10 N 1.30676 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47099 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47263 * 120.00365 * 11 9 7 14 14 H 1.48500 * 109.46953 * 240.00522 * 11 9 7 15 15 N 1.33977 * 118.75079 * 179.70168 * 6 5 4 16 16 C 1.32116 * 120.34888 * 0.08576 * 15 6 5 17 17 N 1.38384 * 119.05276 * 180.08258 * 16 15 6 18 18 N 1.32615 * 121.89261 * 0.05242 * 16 15 6 19 19 C 1.32778 * 121.32773 * 359.96487 * 18 16 15 20 20 C 1.46690 * 110.99787 * 236.83292 * 2 1 3 21 21 H 1.08992 * 109.47459 * 179.21430 * 1 2 3 22 22 H 1.09004 * 109.47040 * 299.21581 * 1 2 3 23 23 H 1.09000 * 109.47033 * 59.21533 * 1 2 3 24 24 H 1.09003 * 109.62264 * 285.09639 * 3 2 1 25 25 H 1.09004 * 109.62068 * 45.64530 * 3 2 1 26 26 H 1.09006 * 109.41857 * 289.98300 * 4 3 2 27 27 H 1.09000 * 109.34664 * 170.16325 * 4 3 2 28 28 H 0.97000 * 119.99936 * 179.97438 * 10 9 7 29 29 H 0.97005 * 119.99827 * 359.97438 * 17 16 15 30 30 H 0.97001 * 120.00035 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.31235 * 296.25023 * 20 2 1 32 32 H 1.09000 * 109.32362 * 55.87262 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9964 1.3737 0.0000 4 6 3.4811 1.3253 0.3666 5 6 4.1847 0.3073 -0.4883 6 6 5.5922 0.3339 -0.5810 7 6 6.3425 1.3109 0.1160 8 1 5.8378 2.0452 0.7264 9 6 7.7397 1.3248 0.0151 10 7 8.3504 0.4360 -0.7230 11 14 8.7299 2.6139 0.9356 12 1 7.8084 3.4969 1.6948 13 1 9.6608 1.9431 1.8783 14 1 9.5077 3.4262 -0.0342 15 7 6.2054 -0.5830 -1.3415 16 6 5.4996 -1.4913 -1.9914 17 7 6.1606 -2.4267 -2.7679 18 7 4.1760 -1.5327 -1.9206 19 6 3.4962 -0.6583 -1.1883 20 6 1.9947 -0.7492 -1.1464 21 1 -0.3634 -1.0275 -0.0141 22 1 -0.3633 0.5016 0.8970 23 1 -0.3633 0.5260 -0.8829 24 1 1.8780 1.8113 -0.9913 25 1 1.4575 1.9727 0.7341 26 1 3.5864 1.0517 1.4165 27 1 3.9259 2.3066 0.2016 28 1 9.3178 0.4459 -0.7932 29 1 7.1286 -2.4091 -2.8295 30 1 5.6561 -3.0996 -3.2513 31 1 1.6991 -1.7948 -1.0598 32 1 1.5852 -0.3338 -2.0672 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:55 Heat of formation + Delta-G solvation = 29.285696 kcal Electronic energy + Delta-G solvation = -16532.033971 eV Core-core repulsion = 13912.309823 eV Total energy + Delta-G solvation = -2619.724148 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17283 -38.71788 -36.24230 -34.91650 -33.60042 -32.69498 -30.01958 -28.95858 -27.30786 -24.60410 -23.91695 -22.87557 -20.83952 -19.61062 -18.16987 -17.43452 -16.79104 -16.24871 -16.09934 -15.92898 -15.34409 -14.97318 -14.69215 -14.54459 -14.04388 -13.50097 -13.22145 -13.00179 -12.88120 -12.58562 -12.56181 -12.36574 -12.00447 -11.72192 -11.54225 -10.84343 -10.75870 -10.35076 -9.33509 -9.15647 -8.57240 -8.26528 -6.67436 1.04709 1.08456 1.42804 1.58576 1.60288 2.22790 2.78222 2.92581 3.12935 3.83414 3.93652 4.17978 4.30736 4.46331 4.50646 4.61485 4.64906 4.71476 4.81850 4.97139 5.06481 5.09943 5.16228 5.25158 5.33228 5.71117 5.86626 6.05474 6.13403 6.28100 6.49768 6.71680 6.98735 7.01948 7.36272 8.37380 8.50504 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.009457 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.590388 B = 2960.210144 C = 4019.864244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.062 3.938 4 C -0.029 4.029 5 C -0.326 4.326 6 C 0.267 3.733 7 C -0.444 4.444 8 H 0.101 0.899 9 C 0.024 3.976 10 N -0.745 5.745 11 Si 0.989 3.011 12 H -0.248 1.248 13 H -0.268 1.268 14 H -0.267 1.267 15 N -0.596 5.596 16 C 0.531 3.469 17 N -0.828 5.828 18 N -0.673 5.673 19 C 0.173 3.827 20 C 0.128 3.872 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.280 0.720 29 H 0.407 0.593 30 H 0.408 0.592 31 H 0.089 0.911 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 2.158 1.280 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.276 5.276 3 C -0.066 4.066 4 C -0.068 4.068 5 C -0.336 4.336 6 C 0.135 3.865 7 C -0.478 4.478 8 H 0.119 0.881 9 C -0.200 4.200 10 N -0.367 5.367 11 Si 0.809 3.191 12 H -0.171 1.171 13 H -0.193 1.193 14 H -0.192 1.192 15 N -0.325 5.325 16 C 0.170 3.830 17 N -0.379 5.379 18 N -0.405 5.405 19 C 0.035 3.965 20 C -0.001 4.001 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.237 0.763 30 H 0.238 0.762 31 H 0.107 0.893 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.886 1.205 1.110 7.078 hybrid contribution 0.350 0.782 -0.438 0.962 sum -6.537 1.987 0.672 6.865 Atomic orbital electron populations 1.22456 0.84893 1.02923 1.01757 1.62161 1.09415 1.14523 1.41505 1.22189 0.95228 0.88929 1.00211 1.19859 0.93368 0.96255 0.97270 1.20814 0.95232 1.05948 1.11610 1.19015 0.89284 0.89916 0.88276 1.20085 0.92058 1.11376 1.24308 0.88071 1.27104 0.99357 0.98219 0.95294 1.70209 1.10384 1.29133 1.27001 0.85057 0.77992 0.77725 0.78361 1.17141 1.19285 1.19186 1.68945 1.37601 1.08746 1.17254 1.19879 0.85704 0.88631 0.88804 1.41317 1.09149 1.33831 1.53634 1.67412 1.08007 1.33108 1.32002 1.20665 0.95767 0.89436 0.90599 1.20455 0.88170 0.99477 0.91972 0.90632 0.89460 0.94944 0.95258 0.87981 0.92768 0.91852 0.90967 0.76263 0.76220 0.89293 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.54 127.69 1.22 1.84 16 2 N -0.55 -18.07 4.93 -927.35 -4.57 -22.64 16 3 C 0.06 2.01 5.58 86.26 0.48 2.49 16 4 C -0.03 -1.18 5.11 29.76 0.15 -1.03 16 5 C -0.33 -16.48 5.83 -19.38 -0.11 -16.59 16 6 C 0.27 15.15 6.58 40.33 0.27 15.42 16 7 C -0.44 -23.75 8.70 23.53 0.20 -23.54 16 8 H 0.10 4.96 6.35 -2.91 -0.02 4.95 16 9 C 0.02 1.19 5.50 85.32 0.47 1.65 16 10 N -0.75 -39.78 11.52 21.85 0.25 -39.53 16 11 Si 0.99 37.19 29.56 68.60 2.03 39.22 16 12 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 13 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 14 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 15 N -0.60 -34.52 8.07 -191.45 -1.55 -36.06 16 16 C 0.53 28.01 8.66 261.61 2.27 30.28 16 17 N -0.83 -34.79 9.07 -59.91 -0.54 -35.33 16 18 N -0.67 -34.35 10.34 -186.80 -1.93 -36.28 16 19 C 0.17 8.39 6.69 42.22 0.28 8.68 16 20 C 0.13 4.82 5.51 85.53 0.47 5.29 16 21 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.09 1.66 8.11 -2.38 -0.02 1.64 16 23 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 25 H 0.10 2.61 8.01 -2.39 -0.02 2.59 16 26 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.06 2.54 7.07 -2.39 -0.02 2.52 16 28 H 0.28 13.39 8.29 -92.71 -0.77 12.62 16 29 H 0.41 16.18 8.94 -92.70 -0.83 15.35 16 30 H 0.41 14.44 8.94 -92.71 -0.83 13.61 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 Total: -1.00 -67.68 266.97 -1.12 -68.80 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.50 Total: 37.34 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 5.70 Total: 24.49 kcal Atomic # 7 Polarization: -161.50 SS G_CDS: -8.34 Total: -169.85 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -67.68 -1.12 -68.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.082 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds