Wall clock time and date at job start Mon Mar 30 2020 03:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 C 1.53005 * 109.47000 * 60.28391 * 9 7 2 12 12 N 1.46902 * 109.47284 * 184.99804 * 11 9 7 13 13 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 14 14 C 1.35078 * 126.36733 * 299.69317 * 13 9 7 15 15 N 1.36556 * 108.27988 * 179.82536 * 14 13 9 16 16 H 0.96999 * 125.67335 * 180.09241 * 15 14 13 17 17 C 1.35825 * 108.65195 * 0.38839 * 15 14 13 18 18 C 1.35266 * 108.18545 * 359.81804 * 17 15 14 19 19 C 1.50750 * 124.34352 * 179.83356 * 18 17 15 20 20 C 1.53402 * 108.37329 * 343.50973 * 19 18 17 21 21 C 1.53109 * 109.44104 * 49.79193 * 20 19 18 22 22 C 1.50895 * 127.80713 * 179.81793 * 17 15 14 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46462 * 304.99591 * 11 9 7 25 25 H 1.08996 * 109.47598 * 64.99169 * 11 9 7 26 26 H 1.00900 * 110.99459 * 56.04280 * 12 11 9 27 27 H 1.00898 * 111.00026 * 179.97438 * 12 11 9 28 28 H 1.07999 * 125.86274 * 359.95259 * 14 13 9 29 29 H 1.08992 * 109.68289 * 103.29449 * 19 18 17 30 30 H 1.09001 * 109.68199 * 223.84241 * 19 18 17 31 31 H 1.08993 * 109.50092 * 289.78343 * 20 19 18 32 32 H 1.09007 * 109.46210 * 169.76503 * 20 19 18 33 33 H 1.08995 * 109.46683 * 169.83344 * 21 20 19 34 34 H 1.09004 * 109.45890 * 49.84995 * 21 20 19 35 35 H 1.08995 * 109.67673 * 283.10393 * 22 17 15 36 36 H 1.09002 * 109.67761 * 43.64844 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 6 0.3715 -2.5858 -1.2435 12 7 -0.4518 -3.8007 -1.1792 13 6 2.2305 -3.6445 0.0104 14 6 3.1604 -3.9073 -0.9334 15 7 3.8470 -5.0265 -0.5583 16 1 4.5727 -5.4376 -1.0536 17 6 3.3404 -5.4722 0.6205 18 6 2.3419 -4.6391 0.9928 19 6 1.5248 -4.7990 2.2496 20 6 1.7223 -6.2262 2.7763 21 6 3.2189 -6.5432 2.8405 22 6 3.7756 -6.6771 1.4179 23 1 -0.4850 0.8400 0.0004 24 1 -0.2760 -1.7103 -1.2932 25 1 1.0031 -2.6213 -2.1311 26 1 -0.9993 -3.8220 -0.3320 27 1 -1.0425 -3.8807 -1.9933 28 1 3.3328 -3.3301 -1.8298 29 1 1.8587 -4.0808 2.9983 30 1 0.4710 -4.6336 2.0258 31 1 1.2296 -6.9322 2.1079 32 1 1.2905 -6.3082 3.7738 33 1 3.3692 -7.4789 3.3789 34 1 3.7387 -5.7379 3.3596 35 1 3.3860 -7.5837 0.9551 36 1 4.8642 -6.7206 1.4524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261106635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:44 Heat of formation + Delta-G solvation = 21.522901 kcal Electronic energy + Delta-G solvation = -16879.200335 eV Core-core repulsion = 14362.679910 eV Total energy + Delta-G solvation = -2516.520425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55999 -35.88617 -34.99249 -32.00070 -31.35865 -29.07558 -28.24913 -26.39687 -23.70926 -22.70224 -21.38269 -20.95521 -18.02156 -17.66143 -16.68286 -16.10709 -14.62743 -14.49294 -14.23035 -13.67391 -13.40747 -13.22619 -13.05265 -12.53862 -12.39817 -12.04772 -11.77077 -11.35673 -11.24411 -10.96888 -10.93066 -10.57330 -10.45241 -10.22499 -10.07964 -9.71919 -9.34624 -9.04952 -8.34485 -7.43600 -7.27775 -6.81182 -5.92252 -3.97751 3.13442 3.32245 3.40442 3.45288 4.10108 4.12930 4.51457 5.17893 5.23492 5.28590 5.35476 5.76192 5.83737 5.89609 5.92774 5.98926 6.14843 6.19712 6.28018 6.40149 6.51311 6.60686 6.79807 6.83006 6.99660 7.26546 7.27392 7.40658 7.69400 7.88649 8.05636 8.10938 8.28909 8.37303 8.52882 8.56383 8.68022 9.08525 9.66008 11.11361 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.007749 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.058152 B = 3612.519048 C = 3742.626213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.496 4.496 8 H 0.057 0.943 9 C 0.112 3.888 10 H 0.029 0.971 11 C 0.067 3.933 12 N -0.852 5.852 13 C -0.077 4.077 14 C -0.035 4.035 15 N -0.564 5.564 16 H 0.399 0.601 17 C -0.017 4.017 18 C -0.155 4.155 19 C -0.041 4.041 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.039 4.039 23 H 0.258 0.742 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.327 0.673 27 H 0.314 0.686 28 H 0.150 0.850 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -11.061 1.760 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.093 3.907 10 H 0.047 0.953 11 C -0.062 4.062 12 N -0.379 5.379 13 C -0.083 4.083 14 C -0.163 4.163 15 N -0.159 5.159 16 H 0.233 0.767 17 C -0.129 4.129 18 C -0.163 4.163 19 C -0.079 4.079 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.077 4.077 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.138 0.862 27 H 0.123 0.877 28 H 0.168 0.832 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.806 -11.357 1.669 12.444 hybrid contribution 0.033 1.552 -0.445 1.615 sum 4.839 -9.805 1.224 11.002 Atomic orbital electron populations 1.69886 1.05817 1.26103 1.51654 1.24988 0.94846 0.98964 0.95437 0.86577 0.80240 0.84012 0.77431 1.19843 1.21214 1.21143 1.21282 0.93074 0.90053 1.49130 0.92512 1.17211 0.90763 0.88973 0.93771 0.95309 1.21997 0.95974 0.89529 0.98744 1.59011 1.29272 1.44067 1.05504 1.19615 0.98274 0.97183 0.93267 1.21484 0.99704 0.92265 1.02832 1.41445 1.30745 1.24372 1.19322 0.76697 1.19862 1.01555 1.00761 0.90768 1.19101 1.00168 0.98199 0.98835 1.19906 0.99060 0.94823 0.94090 1.21580 0.95494 0.98000 1.00221 1.21476 0.96846 1.00955 0.95465 1.20010 0.99215 0.94042 0.94443 0.93249 0.92115 0.94425 0.86243 0.87708 0.83210 0.92163 0.91519 0.92195 0.92532 0.92294 0.91778 0.91855 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 11.30 55.43 0.63 -24.78 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.50 -13.76 8.40 -34.44 -0.29 -14.05 16 8 H 0.06 1.60 7.72 -52.49 -0.41 1.19 16 9 C 0.11 2.86 2.27 -92.92 -0.21 2.65 16 10 H 0.03 0.80 7.64 -51.93 -0.40 0.41 16 11 C 0.07 1.63 5.95 -3.82 -0.02 1.61 16 12 N -0.85 -17.65 9.34 -10.37 -0.10 -17.74 16 13 C -0.08 -1.78 4.53 -104.99 -0.48 -2.25 16 14 C -0.04 -0.73 11.27 -16.57 -0.19 -0.92 16 15 N -0.56 -9.80 6.07 -8.98 -0.05 -9.86 16 16 H 0.40 5.40 8.96 -40.82 -0.37 5.03 16 17 C -0.02 -0.31 7.05 -81.79 -0.58 -0.89 16 18 C -0.16 -3.20 5.93 -104.90 -0.62 -3.82 16 19 C -0.04 -0.75 5.83 -27.65 -0.16 -0.91 16 20 C -0.12 -1.65 5.91 -26.47 -0.16 -1.81 16 21 C -0.11 -1.42 5.90 -26.49 -0.16 -1.58 16 22 C -0.04 -0.54 6.30 -27.60 -0.17 -0.71 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.06 1.62 5.96 -51.93 -0.31 1.31 16 25 H 0.04 0.91 7.87 -51.93 -0.41 0.51 16 26 H 0.33 6.65 8.99 -39.29 -0.35 6.29 16 27 H 0.31 5.75 9.08 -39.29 -0.36 5.39 16 28 H 0.15 3.01 8.06 -52.49 -0.42 2.58 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 31 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.88 8.11 -51.93 -0.42 0.45 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -30.02 289.81 -8.83 -38.85 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.53 Total: 13.88 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.13 Total: -21.18 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.48 Total: -52.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.02 -8.83 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261106635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.373 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds