Wall clock time and date at job start Mon Mar 30 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46790 * 119.99973 * 8 6 4 11 11 H 1.48501 * 109.47046 * 239.99648 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 N 1.40099 * 119.99918 * 89.99656 * 12 2 1 14 14 C 1.29744 * 119.99872 * 179.97438 * 13 12 2 15 15 C 1.47482 * 119.99893 * 180.02562 * 14 13 12 16 16 C 1.40291 * 120.48710 * 180.02562 * 15 14 13 17 17 C 1.37987 * 118.36905 * 180.02562 * 16 15 14 18 18 C 1.39274 * 119.26116 * 359.97438 * 17 16 15 19 19 N 1.38947 * 119.53809 * 179.97438 * 18 17 16 20 20 N 1.32447 * 120.92316 * 359.97438 * 18 17 16 21 21 C 1.31770 * 121.78521 * 359.71115 * 20 18 17 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 25 25 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 26 26 H 0.97007 * 120.00087 * 270.00667 * 12 2 1 27 27 H 1.07997 * 119.99958 * 0.02562 * 14 13 12 28 28 H 1.07997 * 120.81758 * 0.02562 * 16 15 14 29 29 H 1.08003 * 120.37263 * 179.97438 * 17 16 15 30 30 H 0.97008 * 119.99860 * 359.97438 * 19 18 17 31 31 H 0.96995 * 120.00474 * 180.02562 * 19 18 17 32 32 H 1.08007 * 119.68068 * 180.30617 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1485 -2.2856 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5864 4.8166 12 7 2.0184 -0.6907 -1.1962 13 7 2.2518 0.0298 -2.3748 14 6 2.6847 -0.5818 -3.4340 15 6 2.9310 0.1768 -4.6746 16 6 3.3985 -0.4742 -5.8260 17 6 3.6146 0.2780 -6.9624 18 6 3.3631 1.6474 -6.9303 19 7 3.5792 2.4105 -8.0713 20 7 2.9209 2.2326 -5.8275 21 6 2.6956 1.5509 -4.7226 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1609 3.4843 26 1 2.1799 -1.6469 -1.1721 27 1 2.8647 -1.6463 -3.4072 28 1 3.5849 -1.5380 -5.8229 29 1 3.9747 -0.1900 -7.8668 30 1 3.9034 1.9888 -8.8826 31 1 3.4067 3.3649 -8.0564 32 1 2.3303 2.0619 -3.8440 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308812430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:59 Heat of formation + Delta-G solvation = 52.821543 kcal Electronic energy + Delta-G solvation = -15159.996001 eV Core-core repulsion = 12541.292444 eV Total energy + Delta-G solvation = -2618.703557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95518 -38.07093 -36.28378 -35.17103 -33.52583 -32.91261 -30.59203 -28.24281 -27.26051 -24.94865 -23.95391 -22.29282 -21.52589 -18.91238 -18.38637 -18.19227 -17.07634 -17.01036 -16.37219 -15.57276 -15.27324 -15.18029 -14.80308 -14.47132 -14.20256 -13.86874 -13.43282 -13.14494 -12.85368 -12.74471 -12.49994 -12.24823 -12.06887 -11.51039 -11.16358 -10.94957 -10.68705 -10.56221 -10.25497 -9.19630 -8.20556 -8.05003 -6.33477 0.15777 0.49403 1.43217 1.43957 1.56112 1.87106 2.22855 2.50035 2.71524 3.12148 3.15297 3.80066 3.99817 4.18085 4.26141 4.44913 4.71359 4.80538 4.97035 5.01325 5.12925 5.17780 5.23366 5.47701 5.60446 5.73242 5.82303 5.91202 6.21072 6.44665 6.47347 6.61781 6.87751 7.38237 7.43056 7.86381 8.88866 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.058121 B = 0.004091 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.638479 B = 6842.255476 C = 7017.198516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.307 3.693 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.643 5.643 13 N -0.256 5.256 14 C 0.044 3.956 15 C -0.147 4.147 16 C -0.014 4.014 17 C -0.230 4.230 18 C 0.385 3.615 19 N -0.839 5.839 20 N -0.574 5.574 21 C 0.154 3.846 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.266 0.734 26 H 0.373 0.627 27 H 0.125 0.875 28 H 0.168 0.832 29 H 0.169 0.831 30 H 0.422 0.578 31 H 0.406 0.594 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -3.015 -19.679 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.203 3.797 3 H 0.017 0.983 4 C -0.585 4.585 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.380 5.380 13 N -0.065 5.065 14 C -0.167 4.167 15 C -0.155 4.155 16 C -0.042 4.042 17 C -0.255 4.255 18 C 0.146 3.854 19 N -0.384 5.384 20 N -0.293 5.293 21 C -0.005 4.005 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.210 0.790 27 H 0.142 0.858 28 H 0.185 0.815 29 H 0.186 0.814 30 H 0.254 0.746 31 H 0.235 0.765 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.007 -1.056 -18.969 19.647 hybrid contribution 0.461 -1.828 0.699 2.010 sum 5.468 -2.884 -18.270 19.288 Atomic orbital electron populations 1.22021 0.98901 0.99043 0.99566 1.18094 0.90203 0.91578 0.79836 0.98259 1.21569 1.32362 1.13444 0.91167 0.92002 1.25736 0.94916 0.95663 1.01992 1.70032 1.36947 1.23813 1.24586 0.85308 0.78137 0.78440 0.78492 1.19019 1.20620 1.20178 1.48444 1.75105 1.07566 1.06862 1.73933 1.09108 1.28884 0.94616 1.23814 1.03926 0.97833 0.91092 1.19165 1.08508 0.94060 0.93744 1.21681 0.91432 1.01378 0.89701 1.21571 1.10141 0.92287 1.01469 1.18872 0.89839 0.89508 0.87207 1.42171 1.74328 1.11387 1.10500 1.67092 1.21001 1.40999 1.00195 1.22517 0.92613 0.91288 0.94077 0.95056 0.91359 0.96441 0.92440 0.78977 0.85752 0.81478 0.81398 0.74557 0.76494 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.01 9.29 71.98 0.67 -6.34 16 2 C 0.31 16.44 3.23 44.25 0.14 16.59 16 3 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 4 C -0.55 -30.18 8.74 25.60 0.22 -29.96 16 5 H 0.06 3.31 7.78 -2.91 -0.02 3.29 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.40 16 8 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.64 -29.45 6.10 -172.52 -1.05 -30.50 16 13 N -0.26 -10.77 10.63 -52.17 -0.55 -11.32 16 14 C 0.04 1.45 10.77 87.44 0.94 2.39 16 15 C -0.15 -4.27 5.88 -20.04 -0.12 -4.39 16 16 C -0.01 -0.29 9.93 22.71 0.23 -0.07 16 17 C -0.23 -4.10 9.91 22.46 0.22 -3.88 16 18 C 0.39 8.58 7.74 133.10 1.03 9.61 16 19 N -0.84 -11.70 9.07 -55.35 -0.50 -12.20 16 20 N -0.57 -17.16 10.37 -192.12 -1.99 -19.15 16 21 C 0.15 5.04 10.74 85.01 0.91 5.95 16 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.37 15.58 8.58 -213.31 -1.83 13.75 16 27 H 0.13 3.40 8.02 -2.91 -0.02 3.37 16 28 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.42 2.89 8.82 -92.70 -0.82 2.08 16 31 H 0.41 5.39 8.95 -92.71 -0.83 4.56 16 32 H 0.14 5.11 7.55 -2.91 -0.02 5.09 16 Total: -1.00 -67.58 284.53 0.55 -67.03 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -2.31 Total: 22.25 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.70 Total: -8.72 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -3.86 Total: -125.58 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.58 0.55 -67.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308812430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.847 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds