Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99922 * 336.90449 * 7 2 1 9 9 N 1.36931 * 119.99398 * 156.90611 * 7 2 1 10 10 C 1.46494 * 120.00496 * 320.84704 * 9 7 2 11 11 C 1.50710 * 109.47339 * 270.00414 * 10 9 7 12 12 C 1.38602 * 120.71787 * 269.72130 * 11 10 9 13 13 N 1.32280 * 119.19519 * 179.71400 * 12 11 10 14 14 C 1.32493 * 120.73898 * 0.56631 * 13 12 11 15 15 N 1.38403 * 119.21928 * 179.72537 * 14 13 12 16 16 N 1.32495 * 121.56611 * 359.70787 * 14 13 12 17 17 C 1.32283 * 120.73841 * 359.97438 * 16 14 13 18 18 C 1.46506 * 119.99617 * 140.85133 * 9 7 2 19 19 C 1.53000 * 117.49947 * 4.01988 * 18 9 7 20 20 C 1.52995 * 117.49992 * 295.39655 * 18 9 7 21 21 H 0.97007 * 119.99580 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47041 * 30.00074 * 10 9 7 23 23 H 1.09000 * 109.47639 * 150.00599 * 10 9 7 24 24 H 1.07999 * 120.40517 * 359.97438 * 12 11 10 25 25 H 0.96997 * 120.00293 * 179.97438 * 15 14 13 26 26 H 0.96994 * 119.99799 * 359.97438 * 15 14 13 27 27 H 1.08006 * 120.39576 * 180.02562 * 17 16 14 28 28 H 1.09004 * 115.54689 * 149.72466 * 18 9 7 29 29 H 1.08997 * 117.49933 * 359.97438 * 19 18 9 30 30 H 1.08998 * 117.49929 * 145.01929 * 19 18 9 31 31 H 1.08995 * 117.50052 * 214.98455 * 20 18 9 32 32 H 1.09003 * 117.49653 * 359.97229 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5352 -2.0998 0.3678 9 7 3.2973 -1.2498 -0.4646 10 6 3.6795 -0.4688 -1.6435 11 6 3.4674 -1.2965 -2.8850 12 6 4.4833 -2.0957 -3.3852 13 7 4.2625 -2.8142 -4.4737 14 6 3.0906 -2.7669 -5.0901 15 7 2.8957 -3.5274 -6.2299 16 7 2.1008 -2.0091 -4.6411 17 6 2.2540 -1.2709 -3.5542 18 6 4.2920 -2.0821 0.2168 19 6 3.8101 -2.9463 1.3837 20 6 4.6642 -1.7057 1.6522 21 1 -0.4850 0.8401 -0.0004 22 1 3.0666 0.4310 -1.6977 23 1 4.7303 -0.1887 -1.5688 24 1 5.4423 -2.1347 -2.8899 25 1 2.0421 -3.5017 -6.6900 26 1 3.6125 -4.0861 -6.5686 27 1 1.4433 -0.6555 -3.1928 28 1 5.0803 -2.4870 -0.4179 29 1 2.7531 -2.8954 1.6448 30 1 4.2812 -3.9202 1.5169 31 1 5.6972 -1.8632 1.9621 32 1 4.1693 -0.8385 2.0895 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308818782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = 89.447205 kcal Electronic energy + Delta-G solvation = -16421.905825 eV Core-core repulsion = 13804.790476 eV Total energy + Delta-G solvation = -2617.115350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78829 -38.91459 -36.28992 -35.05087 -34.48619 -33.51324 -31.12631 -27.23421 -25.80084 -25.33219 -23.35108 -22.86707 -21.39136 -19.03321 -18.84167 -18.51460 -17.16352 -17.06076 -16.35325 -15.89999 -15.72132 -15.38725 -15.13029 -14.47813 -14.25087 -14.17958 -13.73084 -13.07352 -12.62492 -12.17835 -12.09276 -11.88769 -11.80590 -11.67131 -11.62295 -11.25599 -10.93765 -10.57948 -10.00363 -9.08034 -8.60043 -8.17913 -5.56866 0.27557 0.34293 1.32996 1.45977 1.56230 2.32493 2.43325 2.89518 3.11194 3.35252 3.38206 3.39161 3.94589 4.10513 4.12615 4.33082 4.34162 4.43084 4.55366 4.76155 4.90501 4.97878 5.06131 5.20506 5.35349 5.49590 5.57713 5.96591 6.02942 6.24420 6.44618 6.47316 7.01675 7.51636 7.64674 8.05534 9.00813 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.009646 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.231947 B = 2902.074398 C = 3513.812548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.010 4.010 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.313 1.313 6 H -0.254 1.254 7 C -0.251 4.251 8 H 0.037 0.963 9 N -0.577 5.577 10 C 0.185 3.815 11 C -0.248 4.248 12 C 0.199 3.801 13 N -0.578 5.578 14 C 0.535 3.465 15 N -0.810 5.810 16 N -0.593 5.593 17 C 0.194 3.806 18 C 0.107 3.893 19 C -0.195 4.195 20 C -0.207 4.207 21 H 0.263 0.737 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.197 0.803 25 H 0.419 0.581 26 H 0.422 0.578 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 -3.643 -7.574 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.207 4.207 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.242 1.242 6 H -0.177 1.177 7 C -0.381 4.381 8 H 0.055 0.945 9 N -0.296 5.296 10 C 0.059 3.941 11 C -0.258 4.258 12 C 0.031 3.969 13 N -0.301 5.301 14 C 0.176 3.824 15 N -0.362 5.362 16 N -0.316 5.316 17 C 0.027 3.973 18 C 0.000 4.000 19 C -0.233 4.233 20 C -0.247 4.247 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.110 0.890 24 H 0.214 0.786 25 H 0.251 0.749 26 H 0.255 0.745 27 H 0.161 0.839 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.435 -4.099 -8.402 14.770 hybrid contribution -0.696 1.163 0.847 1.598 sum 10.739 -2.936 -7.555 13.455 Atomic orbital electron populations 1.70015 1.07771 1.27459 1.53281 1.26027 0.95436 1.00813 0.98429 0.86107 0.79664 0.80376 0.78090 1.19157 1.24230 1.17741 1.18446 0.88176 0.92829 1.38627 0.94515 1.43777 1.06415 1.52878 1.26545 1.20065 1.00134 0.91787 0.82064 1.22128 0.96458 1.06121 1.01123 1.23202 0.99027 0.86270 0.88352 1.67935 1.22245 1.27079 1.12863 1.19721 0.85523 0.88391 0.88801 1.41559 1.20142 1.48739 1.25746 1.67860 1.33257 1.12894 1.17597 1.22724 0.96001 0.91280 0.87296 1.21517 0.94166 0.96956 0.87343 1.23031 0.99472 0.95474 1.05327 1.23344 0.99905 0.97943 1.03514 0.92816 0.93593 0.89026 0.78640 0.74924 0.74541 0.83881 0.85336 0.91758 0.87356 0.86878 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.97 21.65 0.30 -56.76 16 2 C -0.01 -0.54 5.28 84.86 0.45 -0.10 16 3 Si 0.93 43.56 25.31 68.60 1.74 45.29 16 4 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 5 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 6 H -0.25 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.25 -13.50 8.93 84.03 0.75 -12.75 16 8 H 0.04 2.27 6.86 -2.91 -0.02 2.25 16 9 N -0.58 -25.01 2.36 -682.33 -1.61 -26.62 16 10 C 0.19 7.04 4.73 85.64 0.41 7.44 16 11 C -0.25 -9.04 5.50 -19.69 -0.11 -9.15 16 12 C 0.20 6.08 11.00 84.71 0.93 7.01 16 13 N -0.58 -18.37 10.46 -197.99 -2.07 -20.44 16 14 C 0.54 17.61 8.67 261.49 2.27 19.88 16 15 N -0.81 -18.65 9.07 -59.75 -0.54 -19.19 16 16 N -0.59 -22.63 10.46 -197.99 -2.07 -24.70 16 17 C 0.19 7.86 11.00 84.71 0.93 8.80 16 18 C 0.11 3.83 6.57 44.99 0.30 4.12 16 19 C -0.19 -7.02 9.80 30.59 0.30 -6.72 16 20 C -0.21 -7.01 10.34 30.59 0.32 -6.69 16 21 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 22 H 0.05 1.95 3.41 -2.39 -0.01 1.94 16 23 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 24 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 25 H 0.42 8.23 8.94 -92.71 -0.83 7.40 16 26 H 0.42 7.44 8.94 -92.71 -0.83 6.61 16 27 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 28 H 0.13 3.63 8.14 -2.38 -0.02 3.61 16 29 H 0.06 2.82 6.44 -2.39 -0.02 2.81 16 30 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -67.35 273.81 1.73 -65.62 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.55 Total: 24.95 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.54 Total: 11.84 kcal Atomic # 7 Polarization: -141.71 SS G_CDS: -5.99 Total: -147.70 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.74 Total: 45.29 kcal Total: -67.35 1.73 -65.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308818782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.067 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds