Wall clock time and date at job start Mon Mar 30 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.38671 * 120.41638 * 269.71879 * 16 15 14 18 18 C 1.38628 * 118.42115 * 179.78210 * 17 16 15 19 19 C 1.38232 * 119.15880 * 0.51393 * 18 17 16 20 20 N 1.31855 * 120.76084 * 359.72485 * 19 18 17 21 21 C 1.31885 * 121.72863 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 24 24 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 25 25 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 26 26 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 27 27 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 28 28 H 1.00896 * 111.00080 * 151.04437 * 13 2 1 29 29 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 30 30 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 31 31 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 32 32 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 33 33 H 1.08001 * 120.79132 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.42215 * 180.22103 * 18 17 16 35 35 H 1.08000 * 119.61432 * 179.74986 * 19 18 17 36 36 H 1.07994 * 119.61620 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 2.6599 0.4058 4.7515 17 6 3.8146 1.1284 5.0116 18 6 3.8263 1.9832 6.1028 19 6 2.6982 2.0782 6.8961 20 7 1.6192 1.3719 6.6214 21 6 1.5704 0.5534 5.5884 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 6.0246 -1.4984 -3.1541 28 1 2.9172 -1.1205 1.0288 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6164 2.5525 31 1 1.9200 -1.3566 3.8031 32 1 3.5916 -0.9262 3.3684 33 1 4.6828 1.0305 4.3767 34 1 4.7071 2.5641 6.3331 35 1 2.7007 2.7388 7.7505 36 1 0.6690 -0.0092 5.3954 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308829393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:39 Heat of formation + Delta-G solvation = 14.742666 kcal Electronic energy + Delta-G solvation = -15750.626977 eV Core-core repulsion = 13233.812539 eV Total energy + Delta-G solvation = -2516.814438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20892 -36.99523 -34.30002 -32.56092 -32.02948 -30.62039 -27.93734 -27.27838 -23.60034 -23.52187 -22.35515 -21.05250 -19.41007 -17.12750 -16.85259 -16.44771 -15.42050 -15.10806 -14.69276 -14.26117 -13.94925 -13.46146 -13.26960 -13.08483 -12.67792 -12.53468 -12.01466 -11.83795 -11.63279 -11.40253 -11.19457 -10.98143 -10.71442 -10.25923 -9.85656 -9.80219 -9.54169 -9.45607 -9.25909 -8.94752 -8.58891 -7.75380 -6.10385 -4.09040 1.04767 1.22667 3.29158 3.36627 3.40720 3.74432 4.36208 4.41574 4.63635 4.77038 4.93187 4.96716 5.12316 5.28086 5.33016 5.51513 5.54163 5.69538 5.78982 5.90540 6.03059 6.04431 6.07723 6.19918 6.27058 6.39151 6.44800 6.65764 6.69603 6.77066 7.16130 7.25753 7.72605 7.85619 7.89897 8.18829 8.44507 8.91026 9.52525 11.02582 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.004759 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.657726 B = 5882.658094 C = 6401.473344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.289 1.289 13 N -0.685 5.685 14 C 0.067 3.933 15 C -0.078 4.078 16 C -0.121 4.121 17 C -0.074 4.074 18 C -0.171 4.171 19 C 0.084 3.916 20 N -0.487 5.487 21 C 0.099 3.901 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.021 0.979 26 H 0.022 0.978 27 H 0.263 0.737 28 H 0.358 0.642 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 3.774 14.120 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.215 1.215 13 N -0.319 5.319 14 C -0.063 4.063 15 C -0.116 4.116 16 C -0.124 4.124 17 C -0.100 4.100 18 C -0.191 4.191 19 C -0.072 4.072 20 N -0.195 5.195 21 C -0.058 4.058 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.179 0.821 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.169 0.831 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.752 3.558 14.711 16.573 hybrid contribution 1.323 0.065 -1.550 2.039 sum -5.429 3.623 13.160 14.690 Atomic orbital electron populations 1.21831 0.96611 1.01376 0.99796 1.21387 0.93251 0.96039 0.90663 0.94767 1.19775 0.96997 0.95994 0.92706 1.21077 0.89901 1.35314 1.09952 0.91334 1.25007 0.94682 0.95690 0.97858 1.69915 1.06648 1.45296 1.32209 0.86744 0.80419 0.80561 0.81355 1.20194 1.19010 1.21512 1.60581 1.35030 1.32035 1.04277 1.21867 0.99726 0.94132 0.90556 1.20571 1.03059 0.96657 0.91318 1.20994 0.94657 0.98702 0.98001 1.21618 0.98106 0.94046 0.96239 1.22146 1.00171 1.00208 0.96583 1.22706 0.88826 0.96934 0.98773 1.67671 1.27638 1.06257 1.17922 1.22711 0.97817 0.95181 0.90096 0.92608 0.94117 0.93312 0.96071 0.96018 0.92705 0.82110 0.95686 0.91809 0.89825 0.90550 0.84699 0.84939 0.83088 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.16 0.35 -1.97 16 2 C 0.10 1.91 2.59 -67.71 -0.18 1.73 16 3 H 0.03 0.71 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 5 C -0.52 -14.34 8.67 -34.44 -0.30 -14.64 16 6 H 0.07 2.00 7.73 -52.49 -0.41 1.60 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 N -0.69 -12.54 6.31 -106.72 -0.67 -13.22 16 14 C 0.07 1.03 5.47 -3.82 -0.02 1.01 16 15 C -0.08 -1.00 5.63 -27.88 -0.16 -1.16 16 16 C -0.12 -1.48 5.15 -104.48 -0.54 -2.02 16 17 C -0.07 -0.85 9.86 -39.28 -0.39 -1.24 16 18 C -0.17 -1.75 10.11 -39.44 -0.40 -2.15 16 19 C 0.08 0.91 11.18 -17.54 -0.20 0.72 16 20 N -0.49 -6.25 10.36 -13.25 -0.14 -6.39 16 21 C 0.10 1.21 10.86 -17.55 -0.19 1.02 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 28 H 0.36 7.23 7.21 -39.29 -0.28 6.95 16 29 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 30 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 31 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -30.12 300.37 -7.99 -38.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.60 Total: 3.89 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.21 Total: -17.34 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.04 Total: -45.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.12 -7.99 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308829393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.857 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds