Wall clock time and date at job start Mon Mar 30 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53006 * 109.47126 * 180.02562 * 14 13 2 16 16 C 1.50701 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.38671 * 120.41638 * 269.71879 * 16 15 14 18 18 C 1.38628 * 118.42115 * 179.78210 * 17 16 15 19 19 C 1.38232 * 119.15880 * 0.51393 * 18 17 16 20 20 N 1.31855 * 120.76084 * 359.72485 * 19 18 17 21 21 C 1.31885 * 121.72863 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 24 24 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 25 25 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 26 26 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 27 27 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 28 28 H 1.00896 * 111.00080 * 151.04437 * 13 2 1 29 29 H 1.08999 * 109.47253 * 299.99875 * 14 13 2 30 30 H 1.09005 * 109.47412 * 59.99805 * 14 13 2 31 31 H 1.09003 * 109.46687 * 299.99474 * 15 14 13 32 32 H 1.08992 * 109.47039 * 59.99804 * 15 14 13 33 33 H 1.08001 * 120.79132 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.42215 * 180.22103 * 18 17 16 35 35 H 1.08000 * 119.61432 * 179.74986 * 19 18 17 36 36 H 1.07994 * 119.61620 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 2.5962 -0.5328 3.5742 16 6 2.6599 0.4058 4.7515 17 6 3.8146 1.1284 5.0116 18 6 3.8263 1.9832 6.1028 19 6 2.6982 2.0782 6.8961 20 7 1.6192 1.3719 6.6214 21 6 1.5704 0.5534 5.5884 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6055 -0.2619 -2.1370 26 1 1.7517 -1.7715 -1.2055 27 1 6.0246 -1.4984 -3.1541 28 1 2.9172 -1.1205 1.0288 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6164 2.5525 31 1 1.9200 -1.3566 3.8031 32 1 3.5916 -0.9262 3.3684 33 1 4.6828 1.0305 4.3767 34 1 4.7071 2.5641 6.3331 35 1 2.7007 2.7388 7.7505 36 1 0.6690 -0.0092 5.3954 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308829393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:38 Heat of formation + Delta-G solvation = -4.547411 kcal Electronic energy + Delta-G solvation = -15751.463457 eV Core-core repulsion = 13233.812539 eV Total energy + Delta-G solvation = -2517.650919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09637 -38.48048 -35.61062 -34.43868 -33.00793 -31.95115 -29.72903 -28.43647 -24.99721 -24.47843 -23.87687 -22.15847 -21.03942 -18.96466 -17.97047 -17.40685 -16.69079 -16.55496 -16.25838 -15.68040 -15.03088 -14.80346 -14.38884 -14.36223 -14.05382 -13.94428 -13.53552 -13.39838 -13.15842 -12.63370 -12.52825 -12.37118 -12.33484 -11.80433 -11.74308 -11.31253 -11.23443 -10.75730 -10.71077 -10.39018 -9.87115 -9.25525 -8.28708 -6.32003 0.17848 0.33567 1.38039 1.39102 1.50755 2.37236 2.85149 3.05301 3.35043 3.62240 3.90346 3.99860 4.08495 4.13535 4.21792 4.28495 4.38499 4.56060 4.61292 4.67971 4.70302 4.88111 4.97741 5.02418 5.12159 5.14341 5.20588 5.23223 5.37481 5.42361 5.49902 5.67739 5.80262 6.23277 6.34201 6.57768 6.74215 7.02687 7.32820 8.87316 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.004759 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.657726 B = 5882.658094 C = 6401.473344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.017 0.983 4 C -0.013 4.013 5 C -0.525 4.525 6 H 0.034 0.966 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.249 1.249 12 H -0.288 1.288 13 N -0.683 5.683 14 C 0.072 3.928 15 C -0.066 4.066 16 C -0.132 4.132 17 C -0.088 4.088 18 C -0.168 4.168 19 C 0.080 3.920 20 N -0.509 5.509 21 C 0.090 3.910 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.023 0.977 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.343 0.657 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 3.763 14.638 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.035 0.965 4 C -0.051 4.051 5 C -0.563 4.563 6 H 0.052 0.948 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.172 1.172 12 H -0.214 1.214 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.104 4.104 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.187 4.187 19 C -0.076 4.076 20 N -0.218 5.218 21 C -0.066 4.066 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.197 0.803 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.359 3.557 15.245 17.747 hybrid contribution 1.888 0.156 -1.609 2.485 sum -6.471 3.713 13.637 15.544 Atomic orbital electron populations 1.21741 0.93653 1.02101 1.01241 1.21349 0.95527 0.94597 0.89869 0.96454 1.19721 0.94145 0.96582 0.94620 1.21348 0.92091 1.34099 1.08769 0.94812 1.25921 0.95461 0.96853 1.00557 1.70059 1.08510 1.46996 1.33387 0.85685 0.79629 0.79455 0.78011 1.19261 1.17222 1.21362 1.60677 1.33927 1.32442 1.04510 1.21889 1.00016 0.93433 0.90421 1.20414 1.02672 0.96776 0.90567 1.20916 0.95296 0.99212 0.98003 1.21841 0.98120 0.94428 0.96995 1.22453 1.01055 0.99613 0.95577 1.23248 0.88348 0.96596 0.99444 1.67710 1.28768 1.06997 1.18323 1.22909 0.98233 0.95389 0.90073 0.92179 0.92337 0.92296 0.95907 0.95703 0.92606 0.83792 0.97368 0.90744 0.88936 0.91282 0.84421 0.82150 0.80270 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.41 71.98 0.68 -3.36 16 2 C 0.10 3.75 2.59 44.91 0.12 3.87 16 3 H 0.02 0.73 7.80 -2.39 -0.02 0.71 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.53 -29.22 8.67 25.60 0.22 -29.00 16 6 H 0.03 2.06 7.73 -2.91 -0.02 2.03 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -58.40 13.96 21.45 0.30 -58.10 16 9 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.25 -10.73 6.54 99.48 0.65 -10.07 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.68 -24.87 6.31 -491.56 -3.10 -27.97 16 14 C 0.07 2.19 5.47 86.31 0.47 2.66 16 15 C -0.07 -1.68 5.63 29.85 0.17 -1.51 16 16 C -0.13 -3.14 5.15 -19.77 -0.10 -3.24 16 17 C -0.09 -1.96 9.86 22.47 0.22 -1.74 16 18 C -0.17 -3.10 10.11 22.36 0.23 -2.87 16 19 C 0.08 1.57 11.18 84.69 0.95 2.51 16 20 N -0.51 -12.36 10.36 -195.85 -2.03 -14.38 16 21 C 0.09 2.12 10.86 84.67 0.92 3.04 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.06 1.61 7.45 -2.39 -0.02 1.60 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 26 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.34 14.18 7.21 -89.70 -0.65 13.53 16 29 H 0.01 0.27 8.05 -2.39 -0.02 0.25 16 30 H 0.07 2.11 7.44 -2.38 -0.02 2.09 16 31 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 32 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -64.71 300.37 1.84 -62.87 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.34 Total: 21.02 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 4.44 Total: -29.14 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.83 Total: -100.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -64.71 1.84 -62.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308829393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.320 kcal (2) G-P(sol) polarization free energy of solvation -64.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds