Wall clock time and date at job start Mon Mar 30 2020 04:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.50695 * 109.47395 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99902 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00271 * 60.00112 * 4 2 1 7 7 N 1.31517 * 119.99647 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00381 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47324 * 89.99690 * 8 6 4 10 10 H 1.48496 * 109.47288 * 209.99939 * 8 6 4 11 11 H 1.48505 * 109.46896 * 329.99829 * 8 6 4 12 12 N 1.46905 * 109.47085 * 119.99298 * 2 1 3 13 13 C 1.46895 * 111.00220 * 273.95406 * 12 2 1 14 14 H 1.09000 * 109.47183 * 346.59818 * 13 12 2 15 15 C 1.52996 * 109.47376 * 106.60552 * 13 12 2 16 16 C 1.53007 * 109.46734 * 226.59922 * 13 12 2 17 17 C 1.50706 * 109.46735 * 65.00027 * 16 13 12 18 18 C 1.38650 * 120.79007 * 270.29040 * 17 16 13 19 19 C 1.38199 * 119.16192 * 180.22070 * 18 17 16 20 20 N 1.31868 * 120.76514 * 359.48769 * 19 18 17 21 21 C 1.31872 * 121.72781 * 0.26797 * 20 19 18 22 22 C 1.38207 * 120.76041 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47652 * 298.14204 * 1 2 3 24 24 H 1.08999 * 109.46927 * 58.14087 * 1 2 3 25 25 H 1.09005 * 109.47132 * 178.13818 * 1 2 3 26 26 H 0.97001 * 120.00059 * 179.97438 * 7 6 4 27 27 H 1.00903 * 110.99595 * 37.90804 * 12 2 1 28 28 H 1.08999 * 109.46702 * 302.61876 * 15 13 12 29 29 H 1.08997 * 109.47738 * 62.62125 * 15 13 12 30 30 H 1.09003 * 109.47249 * 182.62585 * 15 13 12 31 31 H 1.08999 * 109.47377 * 304.99952 * 16 13 12 32 32 H 1.09004 * 109.46946 * 184.99801 * 16 13 12 33 33 H 1.08001 * 120.41744 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.61966 * 179.75330 * 19 18 17 35 35 H 1.07996 * 119.62028 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.41537 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3430 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 7 2.0197 -0.6924 1.1996 13 6 2.1060 0.2286 2.3407 14 1 2.0170 1.2556 1.9863 15 6 0.9737 -0.0712 3.3250 16 6 3.4533 0.0462 3.0424 17 6 4.5644 0.4592 2.1117 18 6 5.1493 -0.4591 1.2532 19 6 6.1688 -0.0450 0.4172 20 7 6.5787 1.2084 0.4229 21 6 6.0423 2.1098 1.2222 22 6 5.0218 1.7679 2.0892 23 1 -0.3634 0.4847 0.9061 24 1 -0.3633 0.5424 -0.8728 25 1 -0.3634 -1.0272 -0.0334 26 1 0.7088 1.1611 -3.4844 27 1 1.4394 -1.4879 1.4200 28 1 0.0153 0.0133 2.8128 29 1 1.0894 -1.0825 3.7148 30 1 1.0097 0.6420 4.1485 31 1 3.5806 -1.0006 3.3182 32 1 3.4823 0.6644 3.9397 33 1 4.8145 -1.4859 1.2403 34 1 6.6324 -0.7551 -0.2516 35 1 6.4041 3.1271 1.1983 36 1 4.5863 2.5107 2.7410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308835124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:35 Heat of formation + Delta-G solvation = 23.164494 kcal Electronic energy + Delta-G solvation = -16736.413061 eV Core-core repulsion = 14219.963821 eV Total energy + Delta-G solvation = -2516.449240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63634 -37.06036 -33.95520 -32.27882 -30.64795 -30.42568 -26.97602 -26.69615 -25.03490 -22.91263 -21.92413 -20.35102 -20.11429 -16.45464 -15.97591 -15.87455 -15.07921 -14.85904 -14.25718 -13.86765 -13.70709 -13.15127 -13.00388 -12.64639 -12.27379 -12.11707 -11.86550 -11.52704 -11.14320 -11.00396 -10.88327 -10.81293 -10.50449 -10.37400 -10.13105 -9.79913 -9.09000 -8.97194 -8.77407 -8.56516 -8.33443 -7.24279 -5.95752 -3.98216 1.69614 1.85122 3.33927 3.40831 3.44794 4.35222 4.46206 4.95123 5.01880 5.12261 5.32886 5.36399 5.49469 5.59468 5.63881 5.75586 5.80198 5.88383 6.06966 6.15887 6.22103 6.32575 6.41011 6.48494 6.58532 6.74033 6.85794 6.95897 7.10984 7.26920 7.39069 7.75276 7.91191 8.30358 8.49440 8.56222 8.63863 9.08183 9.66975 11.11447 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.010160 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.373665 B = 2755.317868 C = 3802.278157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.217 3.783 3 H 0.029 0.971 4 C -0.490 4.490 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.677 5.677 13 C 0.086 3.914 14 H 0.065 0.935 15 C -0.172 4.172 16 C -0.069 4.069 17 C -0.017 4.017 18 C -0.127 4.127 19 C 0.093 3.907 20 N -0.496 5.496 21 C 0.087 3.913 22 C -0.180 4.180 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.258 0.742 27 H 0.326 0.674 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -0.584 11.104 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.109 3.891 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.025 4.025 14 H 0.083 0.917 15 C -0.231 4.231 16 C -0.107 4.107 17 C -0.025 4.025 18 C -0.146 4.146 19 C -0.063 4.063 20 N -0.206 5.206 21 C -0.070 4.070 22 C -0.200 4.200 23 H 0.024 0.976 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.530 -0.148 10.210 11.613 hybrid contribution -1.574 -0.458 -0.256 1.659 sum 3.956 -0.606 9.954 10.729 Atomic orbital electron populations 1.22496 1.00899 0.99388 1.00064 1.19214 0.89354 0.93973 0.86553 0.95272 1.21109 1.29965 1.12218 0.89566 0.92102 1.24931 0.95393 0.95181 0.98992 1.69882 1.37473 1.23225 1.23219 0.86564 0.79231 0.79260 0.82752 1.20944 1.21442 1.19852 1.60791 1.57250 1.09200 1.03350 1.21513 0.91681 0.97680 0.91626 0.91702 1.22467 0.99621 1.01271 0.99723 1.20728 0.92964 1.01481 0.95521 1.20106 0.94014 0.92936 0.95459 1.21929 0.95656 1.01419 0.95640 1.22637 0.94619 0.92507 0.96515 1.67563 1.29336 1.02535 1.21133 1.22503 0.93829 0.98512 0.92126 1.21918 0.99435 0.96692 1.01948 0.97571 0.89562 0.95364 0.93180 0.85680 0.92295 0.92675 0.93074 0.90884 0.91739 0.84745 0.83524 0.83787 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.91 37.16 0.33 -3.66 16 2 C 0.22 5.28 2.52 -68.87 -0.17 5.11 16 3 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 4 C -0.49 -13.33 8.84 -34.44 -0.30 -13.63 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.95 11.34 55.43 0.63 -25.32 16 8 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.68 -13.28 5.52 -100.96 -0.56 -13.84 16 13 C 0.09 1.42 2.61 -67.71 -0.18 1.24 16 14 H 0.06 1.22 7.15 -51.93 -0.37 0.84 16 15 C -0.17 -2.37 9.06 37.16 0.34 -2.03 16 16 C -0.07 -0.98 5.07 -27.88 -0.14 -1.12 16 17 C -0.02 -0.28 4.98 -104.31 -0.52 -0.80 16 18 C -0.13 -2.18 9.46 -39.44 -0.37 -2.55 16 19 C 0.09 1.65 11.18 -17.55 -0.20 1.45 16 20 N -0.50 -9.08 10.36 -13.25 -0.14 -9.22 16 21 C 0.09 1.42 11.18 -17.55 -0.20 1.23 16 22 C -0.18 -2.81 9.82 -39.44 -0.39 -3.20 16 23 H 0.01 0.11 6.57 -51.93 -0.34 -0.23 16 24 H 0.09 2.29 6.12 -51.93 -0.32 1.97 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.33 6.13 7.92 -39.29 -0.31 5.82 16 28 H 0.06 0.88 6.63 -51.93 -0.34 0.53 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 34 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 35 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -29.62 297.74 -7.91 -37.53 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.41 Total: 6.10 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -1.90 Total: -16.52 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.07 Total: -48.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.62 -7.91 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308835124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.692 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds