Wall clock time and date at job start Mon Mar 30 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47317 * 2 1 4 4 C 1.50695 * 109.47395 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99902 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00271 * 60.00112 * 4 2 1 7 7 N 1.31517 * 119.99647 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00381 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47324 * 89.99690 * 8 6 4 10 10 H 1.48496 * 109.47288 * 209.99939 * 8 6 4 11 11 H 1.48505 * 109.46896 * 329.99829 * 8 6 4 12 12 N 1.46905 * 109.47085 * 119.99298 * 2 1 3 13 13 C 1.46895 * 111.00220 * 273.95406 * 12 2 1 14 14 H 1.09000 * 109.47183 * 346.59818 * 13 12 2 15 15 C 1.52996 * 109.47376 * 106.60552 * 13 12 2 16 16 C 1.53007 * 109.46734 * 226.59922 * 13 12 2 17 17 C 1.50706 * 109.46735 * 65.00027 * 16 13 12 18 18 C 1.38650 * 120.79007 * 270.29040 * 17 16 13 19 19 C 1.38199 * 119.16192 * 180.22070 * 18 17 16 20 20 N 1.31868 * 120.76514 * 359.48769 * 19 18 17 21 21 C 1.31872 * 121.72781 * 0.26797 * 20 19 18 22 22 C 1.38207 * 120.76041 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47652 * 298.14204 * 1 2 3 24 24 H 1.08999 * 109.46927 * 58.14087 * 1 2 3 25 25 H 1.09005 * 109.47132 * 178.13818 * 1 2 3 26 26 H 0.97001 * 120.00059 * 179.97438 * 7 6 4 27 27 H 1.00903 * 110.99595 * 37.90804 * 12 2 1 28 28 H 1.08999 * 109.46702 * 302.61876 * 15 13 12 29 29 H 1.08997 * 109.47738 * 62.62125 * 15 13 12 30 30 H 1.09003 * 109.47249 * 182.62585 * 15 13 12 31 31 H 1.08999 * 109.47377 * 304.99952 * 16 13 12 32 32 H 1.09004 * 109.46946 * 184.99801 * 16 13 12 33 33 H 1.08001 * 120.41744 * 0.02562 * 18 17 16 34 34 H 1.08004 * 119.61966 * 179.75330 * 19 18 17 35 35 H 1.07996 * 119.62028 * 180.02562 * 21 20 19 36 36 H 1.07997 * 120.41537 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3430 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7584 -3.7120 12 7 2.0197 -0.6924 1.1996 13 6 2.1060 0.2286 2.3407 14 1 2.0170 1.2556 1.9863 15 6 0.9737 -0.0712 3.3250 16 6 3.4533 0.0462 3.0424 17 6 4.5644 0.4592 2.1117 18 6 5.1493 -0.4591 1.2532 19 6 6.1688 -0.0450 0.4172 20 7 6.5787 1.2084 0.4229 21 6 6.0423 2.1098 1.2222 22 6 5.0218 1.7679 2.0892 23 1 -0.3634 0.4847 0.9061 24 1 -0.3633 0.5424 -0.8728 25 1 -0.3634 -1.0272 -0.0334 26 1 0.7088 1.1611 -3.4844 27 1 1.4394 -1.4879 1.4200 28 1 0.0153 0.0133 2.8128 29 1 1.0894 -1.0825 3.7148 30 1 1.0097 0.6420 4.1485 31 1 3.5806 -1.0006 3.3182 32 1 3.4823 0.6644 3.9397 33 1 4.8145 -1.4859 1.2403 34 1 6.6324 -0.7551 -0.2516 35 1 6.4041 3.1271 1.1983 36 1 4.5863 2.5107 2.7410 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308835124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:34 Heat of formation + Delta-G solvation = 4.875354 kcal Electronic energy + Delta-G solvation = -16737.206138 eV Core-core repulsion = 14219.963821 eV Total energy + Delta-G solvation = -2517.242317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90938 -38.57716 -35.66720 -33.92016 -32.06770 -31.90913 -28.62669 -27.91415 -27.10242 -24.19028 -23.21319 -22.24044 -21.47037 -18.31457 -17.44508 -17.19102 -16.74796 -16.32067 -15.79460 -15.48606 -15.03083 -14.44279 -14.40115 -14.22415 -13.91975 -13.63616 -13.25660 -12.97597 -12.83204 -12.78115 -12.46233 -12.30433 -12.17951 -12.08335 -11.76213 -11.64256 -10.93313 -10.46696 -10.27541 -10.19244 -9.85818 -8.84888 -8.07835 -6.16741 0.41838 0.56308 1.39430 1.41531 1.50926 2.43603 3.05695 3.21439 3.65751 3.73684 3.89571 4.08243 4.29483 4.39706 4.44474 4.49851 4.54847 4.75994 4.78199 4.86193 4.88770 5.02203 5.03346 5.09015 5.13860 5.25587 5.31371 5.39662 5.48702 5.69580 5.73595 5.88744 6.01973 6.32871 6.72560 6.92664 7.03184 7.19904 7.53140 8.97497 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.010160 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.373665 B = 2755.317868 C = 3802.278157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.229 3.771 3 H -0.011 1.011 4 C -0.500 4.500 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.270 1.270 12 N -0.675 5.675 13 C 0.086 3.914 14 H 0.039 0.961 15 C -0.164 4.164 16 C -0.060 4.060 17 C -0.029 4.029 18 C -0.141 4.141 19 C 0.073 3.927 20 N -0.522 5.522 21 C 0.074 3.926 22 C -0.182 4.182 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.257 0.743 27 H 0.333 0.667 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -1.029 12.652 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.120 3.880 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.195 1.195 12 N -0.305 5.305 13 C -0.025 4.025 14 H 0.057 0.943 15 C -0.222 4.222 16 C -0.098 4.098 17 C -0.037 4.037 18 C -0.160 4.160 19 C -0.083 4.083 20 N -0.232 5.232 21 C -0.082 4.082 22 C -0.202 4.202 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.151 0.849 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.481 -0.609 11.779 13.006 hybrid contribution -1.545 -0.277 -0.679 1.710 sum 3.937 -0.886 11.100 11.810 Atomic orbital electron populations 1.22305 1.00308 0.99283 0.99688 1.18854 0.89563 0.91771 0.87838 0.99285 1.21439 1.29531 1.11996 0.90933 0.92663 1.25654 0.95751 0.95898 1.01752 1.70017 1.38556 1.24450 1.23574 0.85673 0.78919 0.78299 0.79469 1.20022 1.21631 1.19480 1.60649 1.56931 1.09685 1.03254 1.21557 0.94265 0.95461 0.91206 0.94291 1.22357 0.97333 1.03084 0.99434 1.20721 0.90482 1.02919 0.95705 1.20471 0.94455 0.93201 0.95592 1.22056 0.95963 1.01843 0.96174 1.22910 0.95281 0.92853 0.97236 1.67573 1.30359 1.03074 1.22235 1.23038 0.94000 0.99409 0.91792 1.22272 0.98927 0.97095 1.01908 0.95284 0.92742 0.94956 0.93382 0.84926 0.93700 0.90904 0.90617 0.89695 0.88647 0.84637 0.82557 0.81225 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.35 8.91 71.98 0.64 -6.71 16 2 C 0.23 11.20 2.52 44.17 0.11 11.31 16 3 H -0.01 -0.61 7.34 -2.39 -0.02 -0.63 16 4 C -0.50 -27.39 8.84 25.60 0.23 -27.16 16 5 H 0.06 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.39 5.30 84.65 0.45 0.84 16 7 N -0.92 -54.34 11.34 21.45 0.24 -54.09 16 8 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 N -0.68 -25.82 5.52 -473.31 -2.61 -28.43 16 13 C 0.09 2.65 2.61 44.92 0.12 2.77 16 14 H 0.04 1.42 7.15 -2.39 -0.02 1.40 16 15 C -0.16 -3.96 9.06 71.98 0.65 -3.31 16 16 C -0.06 -1.55 5.07 29.85 0.15 -1.40 16 17 C -0.03 -0.91 4.98 -19.67 -0.10 -1.01 16 18 C -0.14 -4.79 9.46 22.36 0.21 -4.57 16 19 C 0.07 2.58 11.18 84.68 0.95 3.53 16 20 N -0.52 -19.08 10.36 -195.84 -2.03 -21.11 16 21 C 0.07 2.35 11.18 84.68 0.95 3.29 16 22 C -0.18 -5.39 9.82 22.36 0.22 -5.17 16 23 H 0.03 1.19 6.57 -2.39 -0.02 1.17 16 24 H 0.05 2.92 6.12 -2.39 -0.01 2.91 16 25 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.33 11.95 7.92 -89.69 -0.71 11.24 16 28 H 0.04 1.21 6.63 -2.39 -0.02 1.20 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 32 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.16 4.93 8.06 -2.91 -0.02 4.91 16 35 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -64.11 297.74 2.55 -61.56 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.35 Total: 22.70 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.58 Total: -27.59 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -4.40 Total: -103.64 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.11 2.55 -61.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308835124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -64.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds