Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 C 1.50699 * 109.47297 * 119.99758 * 2 1 3 5 5 H 1.08001 * 120.00065 * 119.99889 * 4 2 1 6 6 C 1.37881 * 119.99895 * 300.00023 * 4 2 1 7 7 N 1.31508 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99927 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46941 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47250 * 299.99887 * 8 6 4 11 11 H 1.48499 * 109.47009 * 60.00025 * 8 6 4 12 12 N 1.46496 * 109.47530 * 239.99733 * 2 1 3 13 13 N 1.40102 * 120.00208 * 89.99427 * 12 2 1 14 14 C 1.29775 * 120.00139 * 180.02562 * 13 12 2 15 15 C 1.47389 * 119.99887 * 180.02562 * 14 13 12 16 16 C 1.39843 * 120.60326 * 174.55983 * 15 14 13 17 17 C 1.38514 * 118.36176 * 180.02562 * 16 15 14 18 18 C 1.38211 * 119.48670 * 359.97438 * 17 16 15 19 19 N 1.31993 * 121.20036 * 0.02562 * 18 17 16 20 20 C 1.32274 * 121.78369 * 359.69931 * 19 18 17 21 21 N 1.38774 * 119.81508 * 180.31641 * 20 19 18 22 22 H 1.09003 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46985 * 300.00291 * 1 2 3 24 24 H 1.08993 * 109.46737 * 60.00252 * 1 2 3 25 25 H 0.97005 * 120.00124 * 180.02562 * 7 6 4 26 26 H 0.97006 * 120.00336 * 270.00682 * 12 2 1 27 27 H 1.08001 * 119.99792 * 0.02562 * 14 13 12 28 28 H 1.08006 * 120.81768 * 359.97438 * 16 15 14 29 29 H 1.08002 * 120.25610 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.40274 * 179.97438 * 18 17 16 31 31 H 0.96993 * 119.99846 * 185.50154 * 21 20 19 32 32 H 0.96996 * 120.00003 * 5.49402 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 1.8260 -0.4203 5.2205 10 1 1.8259 -2.5200 4.0079 11 1 3.8064 -1.1207 4.0082 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0298 -2.3748 14 6 2.6841 -0.5821 -3.4345 15 6 2.9302 0.1760 -4.6743 16 6 3.5019 -0.4471 -5.7881 17 6 3.7131 0.3094 -6.9290 18 6 3.3565 1.6447 -6.9356 19 7 2.8179 2.2138 -5.8733 20 6 2.5897 1.5364 -4.7604 21 7 2.0154 2.1743 -3.6699 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 0.7087 1.1614 3.4843 26 1 2.1800 -1.6468 -1.1721 27 1 2.8634 -1.6468 -3.4078 28 1 3.7729 -1.4922 -5.7591 29 1 4.1524 -0.1408 -7.8069 30 1 3.5221 2.2334 -7.8257 31 1 1.9199 1.7032 -2.8275 32 1 1.7095 3.0912 -3.7502 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308835676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = 82.324225 kcal Electronic energy + Delta-G solvation = -15594.533528 eV Core-core repulsion = 12977.109303 eV Total energy + Delta-G solvation = -2617.424225 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87873 -36.67580 -34.64408 -33.86702 -32.41987 -30.86617 -29.13095 -27.19464 -25.30552 -23.57301 -22.59366 -20.70525 -20.38787 -17.48989 -17.13700 -16.69692 -15.56062 -15.31177 -14.88003 -14.50620 -14.05951 -13.96401 -13.35700 -12.80693 -12.65786 -12.51450 -11.95036 -11.54901 -11.09510 -10.97269 -10.73164 -10.53895 -10.34394 -10.28349 -9.83349 -9.49168 -9.17765 -9.07600 -8.58169 -7.79099 -6.71735 -6.20272 -4.29082 1.17974 1.74194 2.98537 3.21587 3.26639 3.27553 3.57376 4.10134 4.27761 4.31713 4.89476 5.02855 5.12255 5.16852 5.36652 5.72001 5.72562 6.05592 6.21403 6.37093 6.63315 6.80142 6.89332 6.93768 7.05065 7.47834 7.67143 7.73472 7.86371 7.87290 8.06592 8.21670 8.66762 8.79632 9.19187 9.38110 10.85429 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.052832 B = 0.004825 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.856352 B = 5801.956296 C = 6059.486348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.296 3.704 3 H 0.040 0.960 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.623 5.623 13 N -0.227 5.227 14 C 0.024 3.976 15 C -0.142 4.142 16 C -0.025 4.025 17 C -0.245 4.245 18 C 0.145 3.855 19 N -0.555 5.555 20 C 0.424 3.576 21 N -0.835 5.835 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.012 0.988 25 H 0.266 0.734 26 H 0.372 0.628 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.426 0.574 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -1.605 -13.761 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.194 3.806 3 H 0.058 0.942 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.360 5.360 13 N -0.039 5.039 14 C -0.185 4.185 15 C -0.152 4.152 16 C -0.054 4.054 17 C -0.268 4.268 18 C -0.015 4.015 19 N -0.274 5.274 20 C 0.181 3.819 21 N -0.389 5.389 22 H 0.046 0.954 23 H 0.109 0.891 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.209 0.791 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.274 0.726 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.514 0.321 -12.916 13.162 hybrid contribution 0.632 -2.361 0.946 2.621 sum 3.145 -2.040 -11.969 12.543 Atomic orbital electron populations 1.22226 0.98948 0.99369 1.00548 1.18564 0.90154 0.93467 0.78395 0.94192 1.21172 1.32460 1.13411 0.90135 0.92189 1.24856 0.94744 0.94979 0.98979 1.69867 1.35827 1.22472 1.24140 0.86469 0.79195 0.79602 0.81625 1.21036 1.20146 1.20151 1.48954 1.72923 1.07832 1.06275 1.72494 1.08024 1.28444 0.94950 1.23312 1.07099 0.97000 0.91102 1.18703 1.09221 0.92698 0.94584 1.21295 0.93445 0.99492 0.91130 1.21576 1.09605 0.96007 0.99661 1.22344 0.91855 0.92473 0.94827 1.67207 1.20805 1.39079 1.00336 1.18597 0.88351 0.87687 0.87239 1.43676 1.64651 1.17304 1.13279 0.95387 0.89070 0.96932 0.92430 0.79125 0.87493 0.85128 0.85482 0.83370 0.72599 0.78132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.29 37.16 0.35 -3.26 16 2 C 0.30 7.27 3.23 -69.09 -0.22 7.05 16 3 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.53 -13.94 8.74 -34.44 -0.30 -14.24 16 5 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.13 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.62 -13.17 6.10 -5.89 -0.04 -13.20 16 13 N -0.23 -4.39 7.83 32.14 0.25 -4.14 16 14 C 0.02 0.39 10.76 -14.70 -0.16 0.23 16 15 C -0.14 -2.22 5.90 -104.72 -0.62 -2.84 16 16 C -0.03 -0.31 9.93 -38.88 -0.39 -0.70 16 17 C -0.25 -2.75 10.09 -39.49 -0.40 -3.15 16 18 C 0.14 1.80 11.16 -17.49 -0.20 1.60 16 19 N -0.56 -8.66 10.38 -12.12 -0.13 -8.78 16 20 C 0.42 7.07 7.77 -154.83 -1.20 5.87 16 21 N -0.83 -13.97 8.95 31.34 0.28 -13.69 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.37 7.31 8.58 -182.59 -1.57 5.75 16 27 H 0.11 1.54 8.02 -52.49 -0.42 1.12 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.43 7.83 5.03 -50.68 -0.25 7.58 16 32 H 0.39 5.80 8.95 -40.82 -0.37 5.43 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -28.29 278.97 -8.05 -36.35 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -5.00 Total: 15.13 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.23 Total: -7.75 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: 1.00 Total: -63.32 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.29 -8.05 -36.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308835676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.670 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds