Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 C 1.50699 * 109.47297 * 119.99758 * 2 1 3 5 5 H 1.08001 * 120.00065 * 119.99889 * 4 2 1 6 6 C 1.37881 * 119.99895 * 300.00023 * 4 2 1 7 7 N 1.31508 * 119.99862 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99927 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46941 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47250 * 299.99887 * 8 6 4 11 11 H 1.48499 * 109.47009 * 60.00025 * 8 6 4 12 12 N 1.46496 * 109.47530 * 239.99733 * 2 1 3 13 13 N 1.40102 * 120.00208 * 89.99427 * 12 2 1 14 14 C 1.29775 * 120.00139 * 180.02562 * 13 12 2 15 15 C 1.47389 * 119.99887 * 180.02562 * 14 13 12 16 16 C 1.39843 * 120.60326 * 174.55983 * 15 14 13 17 17 C 1.38514 * 118.36176 * 180.02562 * 16 15 14 18 18 C 1.38211 * 119.48670 * 359.97438 * 17 16 15 19 19 N 1.31993 * 121.20036 * 0.02562 * 18 17 16 20 20 C 1.32274 * 121.78369 * 359.69931 * 19 18 17 21 21 N 1.38774 * 119.81508 * 180.31641 * 20 19 18 22 22 H 1.09003 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46985 * 300.00291 * 1 2 3 24 24 H 1.08993 * 109.46737 * 60.00252 * 1 2 3 25 25 H 0.97005 * 120.00124 * 180.02562 * 7 6 4 26 26 H 0.97006 * 120.00336 * 270.00682 * 12 2 1 27 27 H 1.08001 * 119.99792 * 0.02562 * 14 13 12 28 28 H 1.08006 * 120.81768 * 359.97438 * 16 15 14 29 29 H 1.08002 * 120.25610 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.40274 * 179.97438 * 18 17 16 31 31 H 0.96993 * 119.99846 * 185.50154 * 21 20 19 32 32 H 0.96996 * 120.00003 * 5.49402 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 1.8260 -0.4203 5.2205 10 1 1.8259 -2.5200 4.0079 11 1 3.8064 -1.1207 4.0082 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0298 -2.3748 14 6 2.6841 -0.5821 -3.4345 15 6 2.9302 0.1760 -4.6743 16 6 3.5019 -0.4471 -5.7881 17 6 3.7131 0.3094 -6.9290 18 6 3.3565 1.6447 -6.9356 19 7 2.8179 2.2138 -5.8733 20 6 2.5897 1.5364 -4.7604 21 7 2.0154 2.1743 -3.6699 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 0.7087 1.1614 3.4843 26 1 2.1800 -1.6468 -1.1721 27 1 2.8634 -1.6468 -3.4078 28 1 3.7729 -1.4922 -5.7591 29 1 4.1524 -0.1408 -7.8069 30 1 3.5221 2.2334 -7.8257 31 1 1.9199 1.7032 -2.8275 32 1 1.7095 3.0912 -3.7502 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308835676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = 63.646781 kcal Electronic energy + Delta-G solvation = -15595.343443 eV Core-core repulsion = 12977.109303 eV Total energy + Delta-G solvation = -2618.234140 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97439 -38.16655 -36.20578 -35.19699 -33.87647 -32.43198 -30.34859 -28.71724 -27.29501 -24.81552 -23.69732 -22.33444 -21.84247 -19.00859 -18.30298 -18.18299 -17.13128 -16.72214 -16.39208 -15.65813 -15.40725 -15.21709 -14.74031 -14.49812 -14.19607 -13.76032 -13.41301 -13.04964 -12.82483 -12.75660 -12.48458 -12.24119 -12.09787 -11.62915 -11.25012 -11.00201 -10.70391 -10.53163 -10.24610 -9.08434 -8.22961 -8.09791 -6.35201 0.07386 0.71570 1.43031 1.44327 1.52183 1.73858 2.09632 2.44572 2.93244 3.10864 3.18778 3.83028 3.93758 4.20118 4.34594 4.56332 4.69414 4.77016 4.93939 5.00398 5.11176 5.13793 5.30313 5.47306 5.57099 5.76362 5.85581 5.90197 6.15838 6.37274 6.63938 6.72697 6.86061 7.36160 7.48079 7.75489 8.86130 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.052832 B = 0.004825 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.856352 B = 5801.956296 C = 6059.486348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.307 3.693 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.969 3.031 9 H -0.282 1.282 10 H -0.268 1.268 11 H -0.274 1.274 12 N -0.640 5.640 13 N -0.267 5.267 14 C 0.056 3.944 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.233 4.233 18 C 0.142 3.858 19 N -0.579 5.579 20 C 0.401 3.599 21 N -0.846 5.846 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.377 0.623 27 H 0.132 0.868 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.183 0.817 31 H 0.418 0.582 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -3.123 -15.945 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.204 3.796 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.793 3.207 9 H -0.208 1.208 10 H -0.193 1.193 11 H -0.199 1.199 12 N -0.377 5.377 13 N -0.077 5.077 14 C -0.153 4.153 15 C -0.189 4.189 16 C -0.040 4.040 17 C -0.256 4.256 18 C -0.017 4.017 19 N -0.299 5.299 20 C 0.160 3.840 21 N -0.400 5.400 22 H 0.049 0.951 23 H 0.087 0.913 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.214 0.786 27 H 0.150 0.850 28 H 0.182 0.818 29 H 0.187 0.813 30 H 0.200 0.800 31 H 0.264 0.736 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.837 -1.201 -15.138 15.663 hybrid contribution 0.330 -1.856 1.250 2.262 sum 4.168 -3.058 -13.889 14.819 Atomic orbital electron populations 1.22038 0.98870 0.99119 0.99648 1.18113 0.90149 0.91636 0.79736 0.97968 1.21495 1.32535 1.13573 0.91146 0.92009 1.25681 0.94871 0.95629 1.01864 1.69999 1.36762 1.23689 1.24715 0.85455 0.78548 0.78696 0.77966 1.20758 1.19284 1.19879 1.48404 1.75194 1.07682 1.06400 1.72607 1.11294 1.28654 0.95119 1.23889 1.02656 0.98293 0.90502 1.18900 1.12061 0.92624 0.95362 1.21771 0.91098 1.01083 0.90050 1.22053 1.07826 0.95291 1.00429 1.23105 0.90063 0.93760 0.94801 1.67247 1.21823 1.39924 1.00865 1.18884 0.89091 0.88471 0.87582 1.43697 1.65369 1.17554 1.13351 0.95111 0.91319 0.96314 0.92431 0.78594 0.85039 0.81798 0.81346 0.79965 0.73597 0.77826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 9.29 71.98 0.67 -6.11 16 2 C 0.31 15.68 3.23 44.25 0.14 15.82 16 3 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 4 C -0.55 -29.31 8.74 25.60 0.22 -29.09 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.12 11.32 21.45 0.24 -50.88 16 8 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.64 -27.65 6.10 -172.53 -1.05 -28.70 16 13 N -0.27 -10.51 7.83 -52.23 -0.41 -10.92 16 14 C 0.06 1.81 10.76 87.41 0.94 2.75 16 15 C -0.18 -5.29 5.90 -19.93 -0.12 -5.41 16 16 C -0.01 -0.25 9.93 22.72 0.23 -0.02 16 17 C -0.23 -4.10 10.09 22.33 0.23 -3.88 16 18 C 0.14 3.03 11.16 84.66 0.95 3.97 16 19 N -0.58 -17.21 10.38 -192.27 -2.00 -19.21 16 20 C 0.40 13.17 7.77 133.52 1.04 14.21 16 21 N -0.85 -29.29 8.95 -54.77 -0.49 -29.78 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 26 H 0.38 14.94 8.58 -213.31 -1.83 13.11 16 27 H 0.13 3.47 8.02 -2.91 -0.02 3.45 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.42 16.11 5.03 -105.61 -0.53 15.58 16 32 H 0.39 12.32 8.95 -92.71 -0.83 11.49 16 Total: -1.00 -62.93 278.97 1.03 -61.90 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -2.03 Total: 39.72 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 4.74 Total: -6.23 kcal Atomic # 7 Polarization: -135.79 SS G_CDS: -3.70 Total: -139.50 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -62.93 1.03 -61.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308835676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.545 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds