Wall clock time and date at job start Mon Mar 30 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35079 * 125.85849 * 2 1 4 4 C 1.40248 * 107.26616 * 180.02562 * 3 2 1 5 5 C 1.35261 * 107.61110 * 0.07638 * 4 3 2 6 6 N 1.35828 * 108.18919 * 359.88578 * 5 4 3 7 7 C 1.46503 * 125.67470 * 180.12932 * 6 5 4 8 8 C 1.50906 * 124.00439 * 179.88404 * 5 4 3 9 9 C 1.53344 * 108.40726 * 343.39198 * 8 5 4 10 10 C 1.53102 * 109.52748 * 49.98003 * 9 8 5 11 11 C 1.50749 * 128.04047 * 180.17685 * 4 3 2 12 12 H 1.08997 * 109.67980 * 283.21891 * 11 4 3 13 13 N 1.46495 * 109.68077 * 43.73525 * 11 4 3 14 14 C 1.36935 * 119.99902 * 205.00080 * 13 11 4 15 15 H 1.07998 * 120.00063 * 359.97438 * 14 13 11 16 16 C 1.38818 * 120.00373 * 179.97438 * 14 13 11 17 17 N 1.31618 * 120.00226 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99387 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47419 * 90.00153 * 18 16 14 20 20 H 1.48509 * 109.46810 * 209.99612 * 18 16 14 21 21 H 1.48494 * 109.47300 * 329.99460 * 18 16 14 22 22 H 1.09007 * 109.47711 * 269.96199 * 1 2 3 23 23 H 1.09001 * 109.47363 * 29.96334 * 1 2 3 24 24 H 1.09003 * 109.47141 * 149.96107 * 1 2 3 25 25 H 1.07996 * 126.36964 * 0.02562 * 3 2 1 26 26 H 1.08997 * 109.47190 * 89.99748 * 7 6 5 27 27 H 1.08996 * 109.47388 * 210.00117 * 7 6 5 28 28 H 1.09007 * 109.46993 * 329.99991 * 7 6 5 29 29 H 1.08994 * 109.67657 * 103.12422 * 8 5 4 30 30 H 1.09004 * 109.67326 * 223.66375 * 8 5 4 31 31 H 1.09000 * 109.46291 * 170.00422 * 9 8 5 32 32 H 1.09001 * 109.46189 * 289.98147 * 9 8 5 33 33 H 1.08998 * 109.47463 * 169.87976 * 10 9 8 34 34 H 1.08999 * 109.45720 * 49.87821 * 10 9 8 35 35 H 0.97000 * 120.00225 * 25.00483 * 13 11 4 36 36 H 0.96996 * 119.99856 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2982 1.0948 0.0000 4 6 3.6275 0.6476 -0.0006 5 6 3.6043 -0.7048 -0.0027 6 7 2.3068 -1.1066 -0.0008 7 6 1.8428 -2.4962 0.0006 8 6 4.8407 -1.5700 -0.0064 9 6 6.0360 -0.7047 -0.4233 10 6 6.0576 0.5762 0.4151 11 6 4.8865 1.4767 0.0028 12 1 5.0646 1.8778 -0.9949 13 7 4.7498 2.5774 0.9599 14 6 5.4847 3.7213 0.7973 15 1 6.1654 3.8119 -0.0363 16 6 5.3548 4.7646 1.7038 17 7 6.0616 5.8639 1.5477 18 14 4.1779 4.6076 3.1459 19 1 4.8927 4.0177 4.3062 20 1 3.6628 5.9512 3.5129 21 1 3.0427 3.7293 2.7650 22 1 -0.3635 -0.0007 1.0277 23 1 -0.3634 0.8903 -0.5133 24 1 -0.3633 -0.8897 -0.5145 25 1 1.9686 2.1232 0.0004 26 1 1.7290 -2.8403 1.0286 27 1 0.8829 -2.5593 -0.5119 28 1 2.5713 -3.1231 -0.5138 29 1 5.0097 -1.9729 0.9921 30 1 4.7142 -2.3877 -0.7161 31 1 6.9601 -1.2599 -0.2622 32 1 5.9469 -0.4463 -1.4785 33 1 6.9972 1.1033 0.2492 34 1 5.9656 0.3208 1.4707 35 1 4.1387 2.4959 1.7088 36 1 5.9706 6.5929 2.1810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309233492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:27 Heat of formation + Delta-G solvation = 51.021223 kcal Electronic energy + Delta-G solvation = -16761.208814 eV Core-core repulsion = 14245.967532 eV Total energy + Delta-G solvation = -2515.241282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21593 -36.62905 -33.94346 -32.60446 -30.99860 -30.82352 -28.13469 -26.41110 -25.51288 -23.16636 -21.16706 -20.91376 -19.31937 -18.21365 -17.06513 -16.14148 -15.49570 -14.52721 -14.06626 -13.88923 -13.66469 -13.45778 -13.12816 -12.93653 -12.57121 -12.44136 -12.34099 -11.98514 -11.80348 -11.58367 -11.19921 -11.11312 -10.82954 -10.44817 -10.30598 -10.09120 -9.79615 -9.46229 -8.81952 -8.04551 -7.36324 -7.05063 -5.64978 -2.97812 2.50945 3.14984 3.43586 3.48359 3.54123 3.54970 4.71700 4.75737 4.92292 5.04739 5.17686 5.22908 5.27657 5.30973 5.37642 5.62225 5.64765 5.74973 5.80495 5.85520 5.98403 6.01179 6.10374 6.19458 6.35230 6.43265 6.53264 6.67573 6.96709 7.05395 7.16089 7.53166 7.67151 7.74671 8.14969 8.55837 9.36216 10.09478 10.32352 11.53871 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.008376 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.437893 B = 3341.915227 C = 4095.153456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.167 4.167 4 C -0.151 4.151 5 C 0.005 3.995 6 N -0.445 5.445 7 C 0.076 3.924 8 C -0.040 4.040 9 C -0.110 4.110 10 C -0.134 4.134 11 C 0.250 3.750 12 H 0.059 0.941 13 N -0.742 5.742 14 C -0.235 4.235 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.938 5.938 18 Si 0.881 3.119 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.274 1.274 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.134 0.866 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.362 0.638 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 -18.415 -3.726 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C -0.192 4.192 4 C -0.158 4.158 5 C -0.106 4.106 6 N -0.123 5.123 7 C -0.066 4.066 8 C -0.078 4.078 9 C -0.148 4.148 10 C -0.175 4.175 11 C 0.141 3.859 12 H 0.077 0.923 13 N -0.384 5.384 14 C -0.365 4.365 15 H 0.108 0.892 16 C -0.193 4.193 17 N -0.587 5.587 18 Si 0.711 3.289 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.200 1.200 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.521 -18.570 -3.812 20.785 hybrid contribution -0.892 -0.039 1.176 1.477 sum -9.414 -18.609 -2.636 21.021 Atomic orbital electron populations 1.20195 0.88801 1.02385 1.01887 1.20280 0.92895 0.85796 1.13185 1.20479 0.92334 0.97372 1.08983 1.19839 0.95571 0.92003 1.08383 1.20160 0.84065 0.94425 1.11964 1.43489 1.05393 1.05175 1.58222 1.21856 1.01091 0.81128 1.02574 1.20106 0.90682 0.96082 1.00910 1.21521 0.95954 0.96760 1.00610 1.22291 1.00990 0.94877 0.99302 1.18604 0.87889 0.86011 0.93437 0.92310 1.42759 1.50650 1.15176 1.29807 1.19131 1.16806 0.91075 1.09493 0.89221 1.24625 0.99662 0.96197 0.98832 1.69702 1.44313 1.06171 1.38489 0.86576 0.81823 0.76637 0.83826 1.21324 1.21967 1.20049 0.91785 0.90507 0.92613 0.84779 0.91565 0.90423 0.90352 0.91424 0.92137 0.92070 0.91882 0.91683 0.92449 0.80487 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.10 36.00 0.36 -0.50 16 2 C -0.01 -0.19 6.90 -81.62 -0.56 -0.75 16 3 C -0.17 -3.15 10.58 -39.95 -0.42 -3.57 16 4 C -0.15 -2.92 5.48 -104.90 -0.57 -3.49 16 5 C 0.01 0.08 6.70 -81.78 -0.55 -0.47 16 6 N -0.45 -6.43 3.14 -115.13 -0.36 -6.80 16 7 C 0.08 0.71 10.77 59.85 0.64 1.36 16 8 C -0.04 -0.53 5.89 -27.60 -0.16 -0.69 16 9 C -0.11 -1.57 5.90 -26.50 -0.16 -1.72 16 10 C -0.13 -2.48 5.51 -26.48 -0.15 -2.62 16 11 C 0.25 5.32 3.13 -68.87 -0.22 5.11 16 12 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 13 N -0.74 -18.73 4.82 -54.34 -0.26 -18.99 16 14 C -0.24 -6.85 10.43 -15.06 -0.16 -7.00 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 17 N -0.94 -30.21 13.97 55.49 0.78 -29.44 16 18 Si 0.88 23.11 27.74 -169.99 -4.71 18.40 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.52 7.06 -51.93 -0.37 0.15 16 25 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.59 7.03 -51.93 -0.36 0.23 16 28 H 0.08 0.62 7.55 -51.93 -0.39 0.23 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.67 7.74 -51.93 -0.40 0.26 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.36 9.23 5.64 -40.82 -0.23 9.00 16 36 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -33.56 289.89 -7.80 -41.36 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.57 Total: 5.50 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.03 Total: -14.40 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.15 Total: -55.22 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.56 -7.80 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309233492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.382 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds