Wall clock time and date at job start Mon Mar 30 2020 04:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.47291 * 2 1 4 4 N 1.46899 * 109.47160 * 119.99690 * 2 1 3 5 5 C 1.53000 * 109.47282 * 240.00016 * 2 1 3 6 6 H 1.08998 * 109.46981 * 299.99889 * 5 2 1 7 7 C 1.53002 * 109.47002 * 180.02562 * 5 2 1 8 8 N 1.46498 * 109.47076 * 60.00206 * 5 2 1 9 9 C 1.39685 * 119.99838 * 204.99944 * 8 5 2 10 10 C 1.39339 * 119.95222 * 359.97438 * 9 8 5 11 11 C 1.38473 * 120.42533 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32392 * 0.02562 * 11 10 9 13 13 C 1.40747 * 119.89329 * 359.97438 * 12 11 10 14 14 C 1.41411 * 120.20246 * 179.72634 * 13 12 11 15 15 H 1.08000 * 120.00772 * 335.49104 * 14 13 12 16 16 C 1.39934 * 119.99698 * 155.49842 * 14 13 12 17 17 N 1.30830 * 119.99881 * 342.04794 * 16 14 13 18 18 Si 1.86797 * 119.99928 * 162.04434 * 16 14 13 19 19 H 1.48509 * 109.47107 * 89.99974 * 18 16 14 20 20 H 1.48500 * 109.47162 * 209.99791 * 18 16 14 21 21 H 1.48494 * 109.47386 * 330.00006 * 18 16 14 22 22 C 1.38281 * 119.95186 * 180.02562 * 9 8 5 23 23 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46985 * 300.00018 * 1 2 3 25 25 H 1.09005 * 109.46531 * 59.99837 * 1 2 3 26 26 H 1.00901 * 110.99856 * 60.00125 * 4 2 1 27 27 H 1.00900 * 111.00381 * 183.95555 * 4 2 1 28 28 H 1.08996 * 109.47565 * 59.99706 * 7 5 2 29 29 H 1.08999 * 109.47209 * 180.02562 * 7 5 2 30 30 H 1.09007 * 109.46735 * 299.99758 * 7 5 2 31 31 H 0.96997 * 120.00205 * 25.00132 * 8 5 2 32 32 H 1.08002 * 119.78718 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.84074 * 179.97438 * 11 10 9 34 34 H 1.08002 * 120.05344 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99961 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.16408 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0401 -0.7212 -1.2492 6 1 1.6768 -1.7489 -1.2492 7 6 3.5701 -0.7218 -1.2488 8 7 1.5518 -0.0306 -2.4454 9 6 1.4184 -0.7274 -3.6486 10 6 1.7506 -2.0793 -3.7102 11 6 1.6217 -2.7797 -4.8977 12 6 1.1639 -2.1470 -6.0318 13 6 0.8245 -0.7819 -5.9849 14 6 0.3591 -0.1243 -7.1471 15 1 0.6206 -0.5038 -8.1238 16 6 -0.4401 1.0185 -7.0316 17 7 -1.0457 1.2818 -5.9022 18 14 -0.6423 2.1681 -8.4900 19 1 -1.8088 1.7373 -9.3019 20 1 -0.8634 3.5530 -8.0018 21 1 0.5844 2.1279 -9.3259 22 6 0.9580 -0.0745 -4.7772 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6962 -1.6479 1.2228 27 1 3.0262 -0.6500 1.2560 28 1 3.9331 -1.2358 -0.3589 29 1 3.9335 -1.2352 -2.1390 30 1 3.9337 0.3059 -1.2486 31 1 1.3211 0.9105 -2.4019 32 1 2.1102 -2.5842 -2.8258 33 1 1.8823 -3.8271 -4.9349 34 1 1.0647 -2.6976 -6.9556 35 1 -1.6001 2.0738 -5.8223 36 1 0.7014 0.9736 -4.7311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313427998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:29 Heat of formation + Delta-G solvation = 8.562498 kcal Electronic energy + Delta-G solvation = -16398.870915 eV Core-core repulsion = 13881.788485 eV Total energy + Delta-G solvation = -2517.082430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.51773 -36.87755 -34.05107 -32.96832 -29.96789 -29.43163 -29.01459 -26.78979 -25.16997 -23.12602 -21.33333 -20.26649 -19.59501 -17.26425 -16.12840 -15.89092 -15.17605 -14.85993 -14.45366 -14.11960 -13.56812 -13.27520 -12.77114 -12.59687 -12.22064 -12.14494 -11.86670 -11.57218 -11.41161 -11.20812 -11.01546 -10.96654 -10.82684 -10.44610 -10.41632 -9.63815 -9.42361 -9.26364 -8.91543 -8.59514 -7.29863 -6.72036 -6.14519 -4.29863 2.87912 3.10179 3.15078 3.24213 3.34844 3.98695 4.22588 4.65897 4.73259 4.88723 5.16480 5.37361 5.58951 5.70738 5.80533 5.87976 5.99415 6.06852 6.27301 6.28808 6.38790 6.41950 6.61484 6.89111 7.06137 7.13398 7.15596 7.38492 7.39718 7.45578 7.82861 7.97033 8.12275 8.18680 8.50637 8.72320 8.85384 9.02661 9.13485 10.26780 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.030637 B = 0.006554 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.698434 B = 4271.023267 C = 4842.513726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.078 0.922 4 N -0.840 5.840 5 C 0.126 3.874 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.750 5.750 9 C 0.219 3.781 10 C -0.301 4.301 11 C -0.066 4.066 12 C -0.259 4.259 13 C 0.140 3.860 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.232 4.232 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.339 0.661 27 H 0.339 0.661 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.389 0.611 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.277 0.723 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -0.368 8.668 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.097 0.903 4 N -0.369 5.369 5 C 0.017 3.983 6 H 0.089 0.911 7 C -0.230 4.230 8 N -0.383 5.383 9 C 0.120 3.880 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.137 3.863 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.256 4.256 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.222 0.778 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.390 0.202 9.309 9.909 hybrid contribution 0.256 0.189 -1.326 1.364 sum 3.646 0.391 7.983 8.785 Atomic orbital electron populations 1.21750 0.93969 1.02159 1.01971 1.21686 0.96140 0.98086 0.87251 0.90341 1.59069 1.16208 1.21426 1.40241 1.21510 0.92942 0.97430 0.86421 0.91129 1.22350 0.97297 1.01784 1.01538 1.44377 1.75555 1.11491 1.06895 1.17632 0.94243 0.90987 0.85164 1.19880 1.21006 0.93835 0.97628 1.20281 0.98227 0.96763 0.93253 1.20857 1.14628 0.95314 0.97121 1.17317 0.86709 0.90017 0.92306 1.19543 1.27551 1.08472 0.93963 0.90637 1.25868 0.93630 0.97579 0.96816 1.69865 1.21414 1.24307 1.26183 0.86407 0.79565 0.79342 0.81925 1.19604 1.20237 1.18550 1.20704 1.12640 1.00037 0.92188 0.92937 0.92507 0.91370 0.84891 0.84749 0.93260 0.91674 0.92791 0.77776 0.89772 0.89768 0.89455 0.91212 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.33 37.16 0.35 -1.55 16 2 C 0.08 1.02 3.05 -67.71 -0.21 0.81 16 3 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 4 N -0.84 -9.07 9.12 -4.66 -0.04 -9.11 16 5 C 0.13 1.87 2.00 -67.93 -0.14 1.73 16 6 H 0.07 1.14 6.47 -51.93 -0.34 0.81 16 7 C -0.17 -2.32 9.09 37.16 0.34 -1.98 16 8 N -0.75 -13.83 4.55 -52.22 -0.24 -14.07 16 9 C 0.22 5.02 6.63 -83.85 -0.56 4.47 16 10 C -0.30 -6.80 8.85 -39.09 -0.35 -7.15 16 11 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 12 C -0.26 -6.59 9.79 -38.83 -0.38 -6.97 16 13 C 0.14 3.81 5.57 -106.85 -0.59 3.22 16 14 C -0.47 -12.63 9.05 -37.74 -0.34 -12.97 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 16 C 0.08 2.00 5.13 -17.34 -0.09 1.91 16 17 N -0.79 -20.66 10.98 55.55 0.61 -20.05 16 18 Si 0.90 18.93 29.60 -169.99 -5.03 13.90 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.23 -6.03 8.54 -38.68 -0.33 -6.36 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.02 7.45 -51.93 -0.39 0.63 16 26 H 0.34 3.41 9.00 -39.29 -0.35 3.05 16 27 H 0.34 3.23 7.39 -39.29 -0.29 2.94 16 28 H 0.05 0.54 6.76 -51.93 -0.35 0.19 16 29 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 6.93 8.39 -40.82 -0.34 6.59 16 32 H 0.08 1.72 6.07 -52.49 -0.32 1.40 16 33 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -27.76 292.91 -8.17 -35.93 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.19 Total: 15.75 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.69 Total: -26.78 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.33 Total: -43.23 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.76 -8.17 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.496 kcal (2) G-P(sol) polarization free energy of solvation -27.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds