Wall clock time and date at job start Mon Mar 30 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.47291 * 2 1 4 4 N 1.46899 * 109.47160 * 119.99690 * 2 1 3 5 5 C 1.53000 * 109.47282 * 240.00016 * 2 1 3 6 6 H 1.08998 * 109.46981 * 299.99889 * 5 2 1 7 7 C 1.53002 * 109.47002 * 180.02562 * 5 2 1 8 8 N 1.46498 * 109.47076 * 60.00206 * 5 2 1 9 9 C 1.39685 * 119.99838 * 204.99944 * 8 5 2 10 10 C 1.39339 * 119.95222 * 359.97438 * 9 8 5 11 11 C 1.38473 * 120.42533 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32392 * 0.02562 * 11 10 9 13 13 C 1.40747 * 119.89329 * 359.97438 * 12 11 10 14 14 C 1.41411 * 120.20246 * 179.72634 * 13 12 11 15 15 H 1.08000 * 120.00772 * 335.49104 * 14 13 12 16 16 C 1.39934 * 119.99698 * 155.49842 * 14 13 12 17 17 N 1.30830 * 119.99881 * 342.04794 * 16 14 13 18 18 Si 1.86797 * 119.99928 * 162.04434 * 16 14 13 19 19 H 1.48509 * 109.47107 * 89.99974 * 18 16 14 20 20 H 1.48500 * 109.47162 * 209.99791 * 18 16 14 21 21 H 1.48494 * 109.47386 * 330.00006 * 18 16 14 22 22 C 1.38281 * 119.95186 * 180.02562 * 9 8 5 23 23 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46985 * 300.00018 * 1 2 3 25 25 H 1.09005 * 109.46531 * 59.99837 * 1 2 3 26 26 H 1.00901 * 110.99856 * 60.00125 * 4 2 1 27 27 H 1.00900 * 111.00381 * 183.95555 * 4 2 1 28 28 H 1.08996 * 109.47565 * 59.99706 * 7 5 2 29 29 H 1.08999 * 109.47209 * 180.02562 * 7 5 2 30 30 H 1.09007 * 109.46735 * 299.99758 * 7 5 2 31 31 H 0.96997 * 120.00205 * 25.00132 * 8 5 2 32 32 H 1.08002 * 119.78718 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.84074 * 179.97438 * 11 10 9 34 34 H 1.08002 * 120.05344 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99961 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.16408 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0401 -0.7212 -1.2492 6 1 1.6768 -1.7489 -1.2492 7 6 3.5701 -0.7218 -1.2488 8 7 1.5518 -0.0306 -2.4454 9 6 1.4184 -0.7274 -3.6486 10 6 1.7506 -2.0793 -3.7102 11 6 1.6217 -2.7797 -4.8977 12 6 1.1639 -2.1470 -6.0318 13 6 0.8245 -0.7819 -5.9849 14 6 0.3591 -0.1243 -7.1471 15 1 0.6206 -0.5038 -8.1238 16 6 -0.4401 1.0185 -7.0316 17 7 -1.0457 1.2818 -5.9022 18 14 -0.6423 2.1681 -8.4900 19 1 -1.8088 1.7373 -9.3019 20 1 -0.8634 3.5530 -8.0018 21 1 0.5844 2.1279 -9.3259 22 6 0.9580 -0.0745 -4.7772 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6962 -1.6479 1.2228 27 1 3.0262 -0.6500 1.2560 28 1 3.9331 -1.2358 -0.3589 29 1 3.9335 -1.2352 -2.1390 30 1 3.9337 0.3059 -1.2486 31 1 1.3211 0.9105 -2.4019 32 1 2.1102 -2.5842 -2.8258 33 1 1.8823 -3.8271 -4.9349 34 1 1.0647 -2.6976 -6.9556 35 1 -1.6001 2.0738 -5.8223 36 1 0.7014 0.9736 -4.7311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313427998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:28 Heat of formation + Delta-G solvation = -9.114561 kcal Electronic energy + Delta-G solvation = -16399.637450 eV Core-core repulsion = 13881.788485 eV Total energy + Delta-G solvation = -2517.848965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04315 -38.40636 -35.74445 -34.60917 -31.42042 -31.24242 -30.12836 -28.35254 -27.10775 -24.33919 -23.08798 -21.88374 -21.07356 -19.10081 -17.73884 -17.05651 -16.68658 -16.50535 -16.13518 -15.36920 -15.01071 -14.68020 -14.26303 -14.23386 -13.97374 -13.60490 -13.29538 -13.01399 -12.79899 -12.68590 -12.63299 -12.42737 -12.13556 -12.07489 -11.83456 -11.53299 -11.27480 -11.06391 -10.55297 -9.68094 -9.24993 -8.62114 -7.88055 -6.31843 1.08830 1.33793 1.38354 1.50696 1.58937 2.23039 2.77232 2.83444 3.66029 3.79035 3.85664 4.07223 4.21701 4.46835 4.50467 4.61763 4.73259 4.79360 4.89064 4.96957 4.99807 5.16362 5.20017 5.28401 5.31229 5.32710 5.47065 5.60887 5.96394 6.09802 6.17013 6.21752 6.28703 6.58567 6.59605 6.94857 7.05987 7.07816 7.26081 8.38315 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.030637 B = 0.006554 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.698434 B = 4271.023267 C = 4842.513726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.093 3.907 3 H 0.082 0.918 4 N -0.834 5.834 5 C 0.124 3.876 6 H 0.063 0.937 7 C -0.164 4.164 8 N -0.743 5.743 9 C 0.226 3.774 10 C -0.302 4.302 11 C -0.064 4.064 12 C -0.288 4.288 13 C 0.109 3.891 14 C -0.506 4.506 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.821 5.821 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.260 4.260 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.346 0.654 27 H 0.350 0.650 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.391 0.609 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.285 0.715 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -0.294 10.134 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.100 0.900 4 N -0.365 5.365 5 C 0.017 3.983 6 H 0.081 0.919 7 C -0.223 4.223 8 N -0.375 5.375 9 C 0.124 3.876 10 C -0.324 4.324 11 C -0.082 4.082 12 C -0.309 4.309 13 C 0.106 3.894 14 C -0.535 4.535 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.447 5.447 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.185 1.185 22 C -0.284 4.284 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.064 0.265 10.828 11.569 hybrid contribution 0.087 0.091 -1.620 1.625 sum 4.151 0.357 9.208 10.107 Atomic orbital electron populations 1.21713 0.94659 1.01755 1.01522 1.21505 0.95471 0.98209 0.86737 0.89977 1.59030 1.17114 1.21903 1.38458 1.21766 0.93959 0.96880 0.85737 0.91940 1.22271 0.95816 1.02194 1.02046 1.44488 1.74697 1.11613 1.06653 1.17718 0.92519 0.91438 0.85881 1.20202 1.20191 0.93659 0.98397 1.20643 0.96701 0.98302 0.92599 1.21011 1.16496 0.95104 0.98278 1.17713 0.87450 0.91137 0.93108 1.19793 1.29384 1.10464 0.93893 0.91158 1.26691 0.92631 0.98454 0.99874 1.69919 1.21698 1.24980 1.28085 0.85277 0.79507 0.77241 0.78074 1.18744 1.19002 1.18523 1.20634 1.14966 0.99520 0.93313 0.93315 0.91376 0.93397 0.84097 0.83522 0.89985 0.93902 0.92472 0.77549 0.87123 0.86604 0.89390 0.90457 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.33 71.98 0.67 -2.84 16 2 C 0.09 2.14 3.05 44.92 0.14 2.28 16 3 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 4 N -0.83 -15.21 9.12 -168.67 -1.54 -16.75 16 5 C 0.12 3.43 2.00 44.99 0.09 3.52 16 6 H 0.06 1.86 6.47 -2.39 -0.02 1.85 16 7 C -0.16 -4.03 9.09 71.98 0.65 -3.37 16 8 N -0.74 -26.90 4.55 -319.12 -1.45 -28.35 16 9 C 0.23 10.40 6.63 38.17 0.25 10.65 16 10 C -0.30 -13.30 8.85 22.59 0.20 -13.10 16 11 C -0.06 -2.92 10.02 22.20 0.22 -2.70 16 12 C -0.29 -15.03 9.79 22.75 0.22 -14.81 16 13 C 0.11 6.17 5.57 -21.31 -0.12 6.05 16 14 C -0.51 -28.55 9.05 23.46 0.21 -28.34 16 15 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 16 C 0.04 2.00 5.13 85.25 0.44 2.44 16 17 N -0.82 -43.94 10.98 21.82 0.24 -43.70 16 18 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 22 C -0.26 -13.97 8.54 22.86 0.20 -13.78 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.40 7.45 -2.38 -0.02 1.38 16 26 H 0.35 5.78 9.00 -89.69 -0.81 4.97 16 27 H 0.35 5.28 7.39 -89.69 -0.66 4.62 16 28 H 0.08 1.47 6.76 -2.39 -0.02 1.46 16 29 H 0.04 1.25 7.69 -2.39 -0.02 1.24 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.39 13.87 8.39 -92.71 -0.78 13.09 16 32 H 0.11 4.25 6.07 -2.91 -0.02 4.23 16 33 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 34 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 36 H 0.10 5.53 6.18 -2.91 -0.02 5.52 16 Total: -1.00 -61.22 292.91 1.31 -59.91 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -1.15 Total: 41.48 kcal Atomic # 6 Polarization: -57.19 SS G_CDS: 3.18 Total: -54.01 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -2.75 Total: -88.80 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -61.22 1.31 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.800 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds