Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34766 * 120.00159 * 2 1 4 4 O 1.21583 * 120.00336 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00150 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00212 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47151 * 180.02562 * 6 5 3 8 8 C 1.38632 * 119.75213 * 269.72575 * 7 6 5 9 9 C 1.37614 * 120.25123 * 179.71891 * 8 7 6 10 10 C 1.40719 * 119.74124 * 0.57305 * 9 8 7 11 11 C 1.41395 * 120.24246 * 179.67718 * 10 9 8 12 12 H 1.07998 * 119.99970 * 155.30784 * 11 10 9 13 13 C 1.39951 * 120.00207 * 335.31835 * 11 10 9 14 14 N 1.30818 * 119.99753 * 342.22830 * 13 11 10 15 15 Si 1.86797 * 120.00021 * 162.22875 * 13 11 10 16 16 H 1.48500 * 109.47048 * 94.66426 * 15 13 11 17 17 H 1.48498 * 109.47252 * 214.66382 * 15 13 11 18 18 H 1.48496 * 109.47461 * 334.66371 * 15 13 11 19 19 C 1.40704 * 119.51466 * 359.70404 * 10 9 8 20 20 C 1.37620 * 119.74516 * 359.97438 * 19 10 9 21 21 H 1.08999 * 109.47361 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46997 * 300.00507 * 1 2 3 23 23 H 1.09002 * 109.47003 * 60.00084 * 1 2 3 24 24 H 0.97006 * 119.99374 * 179.97438 * 2 1 3 25 25 H 0.96998 * 119.99697 * 0.02562 * 5 3 2 26 26 H 1.08998 * 109.46977 * 60.00213 * 6 5 3 27 27 H 1.09001 * 109.47430 * 300.00116 * 6 5 3 28 28 H 1.08005 * 119.87401 * 359.97438 * 8 7 6 29 29 H 1.07997 * 120.13194 * 180.28480 * 9 8 7 30 30 H 0.97004 * 119.99893 * 180.02562 * 14 13 11 31 31 H 1.08007 * 120.13445 * 179.97438 * 19 10 9 32 32 H 1.08000 * 119.87742 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2201 -0.0005 5 7 3.4867 1.1671 0.0005 6 6 4.2192 2.4358 0.0000 7 6 5.7008 2.1603 0.0001 8 6 6.3783 2.0408 1.2037 9 6 7.7301 1.7836 1.2158 10 6 8.4270 1.6540 0.0002 11 6 9.8173 1.3965 0.0003 12 1 10.2771 0.9136 -0.8492 13 6 10.5976 1.7673 1.1014 14 7 10.1417 2.6413 1.9614 15 14 12.2898 1.0142 1.3429 16 1 13.3183 1.9082 0.7529 17 1 12.5542 0.8459 2.7945 18 1 12.3424 -0.3103 0.6734 19 6 7.7302 1.7830 -1.2154 20 6 6.3771 2.0336 -1.2035 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9500 -0.8401 0.0004 25 1 3.9716 0.3270 0.0005 26 1 3.9556 3.0079 0.8895 27 1 3.9563 3.0068 -0.8905 28 1 5.8422 2.1458 2.1354 29 1 8.2551 1.6863 2.1546 30 1 10.6827 2.8986 2.7244 31 1 8.2552 1.6857 -2.1542 32 1 5.8401 2.1326 -2.1353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335482981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -41.950918 kcal Electronic energy + Delta-G solvation = -15461.186718 eV Core-core repulsion = 12806.080768 eV Total energy + Delta-G solvation = -2655.105951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94427 -39.46868 -36.38723 -35.49195 -35.04129 -32.05555 -31.17160 -28.93142 -27.07380 -25.04346 -22.89468 -21.93527 -21.79726 -19.56444 -19.23355 -17.48733 -17.11724 -16.61602 -16.03412 -15.63962 -15.50970 -15.27624 -14.93101 -14.23376 -14.21824 -13.82444 -13.45408 -13.28018 -13.00709 -12.91109 -12.72456 -12.39083 -12.15590 -11.51770 -11.40263 -11.28420 -11.01701 -10.35526 -9.69703 -9.39514 -9.28763 -8.66686 -6.36782 0.83213 1.13862 1.39397 1.45757 1.54465 1.98650 2.18682 2.20531 2.72077 3.50133 3.76537 4.17976 4.33116 4.48928 4.53432 4.66851 4.70198 4.81197 4.98303 5.04889 5.15122 5.35461 5.43204 5.52241 5.58367 5.68961 5.89429 6.08806 6.10877 6.21190 6.36339 6.68046 6.91965 7.00600 7.16504 7.62562 8.30137 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.059216 B = 0.004490 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.730986 B = 6233.946943 C = 6262.520520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.741 5.741 3 C 0.692 3.308 4 O -0.644 6.644 5 N -0.729 5.729 6 C 0.212 3.788 7 C -0.227 4.227 8 C -0.081 4.081 9 C -0.192 4.192 10 C 0.087 3.913 11 C -0.498 4.498 12 H 0.078 0.922 13 C 0.036 3.964 14 N -0.821 5.821 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.243 4.243 20 C -0.067 4.067 21 H 0.114 0.886 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.413 0.587 25 H 0.406 0.594 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.289 0.711 31 H 0.099 0.901 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -7.518 -1.290 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.398 5.398 3 C 0.392 3.608 4 O -0.527 6.527 5 N -0.384 5.384 6 C 0.089 3.911 7 C -0.229 4.229 8 C -0.100 4.100 9 C -0.211 4.211 10 C 0.084 3.916 11 C -0.527 4.527 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.447 5.447 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.263 4.263 20 C -0.086 4.086 21 H 0.133 0.867 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.249 0.751 25 H 0.242 0.758 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.516 -6.421 -1.079 11.530 hybrid contribution 1.314 -0.637 0.240 1.480 sum -8.202 -7.058 -0.840 10.853 Atomic orbital electron populations 1.21533 0.77250 1.04054 1.01137 1.44894 1.08384 1.06716 1.79773 1.16315 0.82135 0.84623 0.77768 1.90859 1.68969 1.32329 1.60507 1.45392 1.03869 1.10437 1.78668 1.19547 0.86827 0.84284 1.00475 1.19196 0.93871 1.16725 0.93075 1.20753 0.93988 0.98642 0.96650 1.21258 0.93480 1.08376 0.98016 1.17999 0.93725 0.87929 0.91906 1.19910 0.93371 1.36054 1.03327 0.90422 1.26775 1.04456 0.92758 0.93941 1.69874 1.39971 1.23198 1.11644 0.85197 0.76295 0.79640 0.78638 1.18835 1.19072 1.18100 1.21162 0.95129 1.13261 0.96726 1.20687 0.93644 0.97534 0.96708 0.86738 0.93625 0.93510 0.75075 0.75815 0.93092 0.92571 0.87810 0.88160 0.90015 0.88297 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.70 127.77 1.37 3.15 16 2 N -0.74 -15.73 5.72 -500.21 -2.86 -18.59 16 3 C 0.69 21.60 8.57 179.06 1.53 23.14 16 4 O -0.64 -25.81 16.34 -3.98 -0.06 -25.87 16 5 N -0.73 -22.07 5.55 -482.31 -2.68 -24.74 16 6 C 0.21 7.53 5.79 85.63 0.50 8.03 16 7 C -0.23 -9.15 5.27 -19.67 -0.10 -9.25 16 8 C -0.08 -3.61 9.67 22.22 0.21 -3.40 16 9 C -0.19 -9.76 8.70 22.73 0.20 -9.57 16 10 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 11 C -0.50 -26.14 9.05 23.46 0.21 -25.93 16 12 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 13 C 0.04 1.78 5.14 85.26 0.44 2.22 16 14 N -0.82 -42.16 10.97 21.83 0.24 -41.92 16 15 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 19 C -0.24 -11.47 9.80 22.73 0.22 -11.25 16 20 C -0.07 -2.78 9.67 22.22 0.21 -2.57 16 21 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.41 6.03 8.84 -92.70 -0.82 5.21 16 25 H 0.41 10.69 8.48 -92.71 -0.79 9.90 16 26 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 27 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 28 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.10 5.38 6.18 -2.91 -0.02 5.36 16 30 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 31 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.24 281.87 0.88 -63.36 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.46 Total: 29.66 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 4.68 Total: -20.99 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -5.30 Total: -85.26 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.06 Total: -25.87 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.24 0.88 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335482981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.409 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds