Wall clock time and date at job start Mon Mar 30 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47487 * 2 1 4 4 C 1.38670 * 120.41825 * 90.00003 * 3 2 1 5 5 C 1.38628 * 118.42164 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.16035 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.61844 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47080 * 94.99717 * 7 6 5 9 9 C 1.36942 * 119.99929 * 90.00498 * 8 7 6 10 10 H 1.07993 * 119.99591 * 214.02012 * 9 8 7 11 11 C 1.38811 * 119.99856 * 34.00711 * 9 8 7 12 12 N 1.31618 * 119.99955 * 23.36881 * 11 9 8 13 13 Si 1.86794 * 119.99923 * 203.35998 * 11 9 8 14 14 H 1.48502 * 109.47087 * 90.00558 * 13 11 9 15 15 H 1.48504 * 109.47354 * 210.00552 * 13 11 9 16 16 H 1.48496 * 109.47157 * 330.00712 * 13 11 9 17 17 C 1.46498 * 119.99939 * 269.99588 * 8 7 6 18 18 C 1.53008 * 109.46808 * 95.42816 * 17 8 7 19 19 N 1.31855 * 120.76430 * 359.97438 * 6 5 4 20 20 C 1.31878 * 121.72360 * 359.70533 * 19 6 5 21 21 H 1.09002 * 109.47361 * 59.99432 * 1 2 3 22 22 H 1.08990 * 109.47260 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46819 * 300.00110 * 1 2 3 24 24 H 1.09001 * 109.46949 * 240.00426 * 2 1 3 25 25 H 1.08996 * 109.47587 * 120.00207 * 2 1 3 26 26 H 1.08001 * 120.79055 * 0.02631 * 4 3 2 27 27 H 1.07998 * 120.42149 * 179.97438 * 5 4 3 28 28 H 1.08992 * 109.47017 * 215.00071 * 7 6 5 29 29 H 1.09009 * 109.46761 * 334.99783 * 7 6 5 30 30 H 0.97002 * 120.00106 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47291 * 215.41994 * 17 8 7 32 32 H 1.08990 * 109.47701 * 335.43072 * 17 8 7 33 33 H 1.08990 * 109.47271 * 59.99492 * 18 17 8 34 34 H 1.08998 * 109.47073 * 179.97438 * 18 17 8 35 35 H 1.09002 * 109.46886 * 299.99614 * 18 17 8 36 36 H 1.08001 * 119.62115 * 180.31123 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2665 2.0827 1.1958 5 6 2.7279 3.3890 1.1475 6 6 2.9372 3.9844 -0.0823 7 6 3.4392 5.4039 -0.1468 8 7 4.8973 5.4003 -0.2892 9 6 5.4635 5.3858 -1.5360 10 1 6.3918 4.8593 -1.7012 11 6 4.8440 6.0475 -2.5872 12 7 4.0120 7.0376 -2.3427 13 14 5.1915 5.5330 -4.3490 14 1 4.2193 4.4885 -4.7605 15 1 5.0607 6.7110 -5.2437 16 1 6.5705 4.9903 -4.4434 17 6 5.7495 5.4124 0.9023 18 6 6.1552 3.9795 1.2537 19 7 2.7038 3.3243 -1.1996 20 6 2.2706 2.0787 -1.1916 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0935 1.5922 2.1423 27 1 2.9205 3.9350 2.0592 28 1 2.9918 5.9089 -1.0029 29 1 3.1648 5.9283 0.7686 30 1 3.5794 7.5002 -3.0774 31 1 6.6429 6.0045 0.7040 32 1 5.2015 5.8497 1.7367 33 1 6.7032 3.5421 0.4193 34 1 6.7897 3.9885 2.1399 35 1 5.2619 3.3873 1.4520 36 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338951721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:13 Heat of formation + Delta-G solvation = 41.644668 kcal Electronic energy + Delta-G solvation = -16682.094413 eV Core-core repulsion = 14166.446533 eV Total energy + Delta-G solvation = -2515.647880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63353 -36.03012 -34.20309 -31.88137 -31.39229 -30.26512 -28.48868 -25.92504 -23.91248 -23.13101 -22.39539 -20.75181 -20.07707 -16.78785 -16.00541 -15.63991 -14.96355 -14.56619 -13.97587 -13.75430 -13.58198 -13.43936 -12.86912 -12.73026 -12.49182 -12.25397 -11.90946 -11.58824 -11.23212 -11.07242 -11.03760 -10.70470 -10.64204 -10.46152 -10.02784 -9.95748 -9.80167 -9.15220 -8.54865 -8.41046 -8.08102 -6.59623 -5.73289 -3.25667 1.76831 1.94302 3.47362 3.53333 3.57032 4.42708 4.62141 4.93092 5.05115 5.17868 5.34839 5.41648 5.44157 5.61689 5.64620 5.68542 5.73146 5.90547 6.01584 6.03640 6.20327 6.27877 6.34054 6.38364 6.43705 6.61466 6.64193 6.81291 6.86852 6.90127 7.14841 7.42505 7.70117 7.88544 8.53629 8.93910 9.21770 9.87480 10.40252 11.27735 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.008654 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.109147 B = 3234.564856 C = 3913.675350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.168 4.168 4 C -0.081 4.081 5 C -0.177 4.177 6 C 0.141 3.859 7 C 0.177 3.823 8 N -0.571 5.571 9 C -0.252 4.252 10 H 0.058 0.942 11 C 0.022 3.978 12 N -0.884 5.884 13 Si 0.897 3.103 14 H -0.282 1.282 15 H -0.293 1.293 16 H -0.281 1.281 17 C 0.142 3.858 18 C -0.169 4.169 19 N -0.457 5.457 20 C 0.098 3.902 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.255 0.745 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 -10.075 6.918 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.171 4.171 4 C -0.107 4.107 5 C -0.198 4.198 6 C 0.000 4.000 7 C 0.050 3.950 8 N -0.290 5.290 9 C -0.381 4.381 10 H 0.076 0.924 11 C -0.178 4.178 12 N -0.526 5.526 13 Si 0.727 3.273 14 H -0.209 1.209 15 H -0.220 1.220 16 H -0.206 1.206 17 C 0.015 3.985 18 C -0.229 4.229 19 N -0.165 5.165 20 C -0.060 4.060 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.759 -9.463 6.004 12.176 hybrid contribution 0.001 -0.995 -0.057 0.997 sum -4.758 -10.458 5.947 12.938 Atomic orbital electron populations 1.21750 0.95217 1.01139 1.02161 1.20347 0.95715 0.92717 1.02294 1.20674 1.04433 0.97368 0.94624 1.21257 0.97574 0.94591 0.97284 1.21980 1.02720 0.95677 0.99425 1.23025 0.89782 1.00146 0.87035 1.20114 0.85417 0.86946 1.02542 1.43705 0.99413 1.84187 1.01668 1.18908 1.07627 1.26297 0.85298 0.92404 1.24955 0.99551 0.94772 0.98534 1.69952 1.32099 1.19491 1.31073 0.86387 0.78111 0.77892 0.84899 1.20875 1.21996 1.20596 1.20877 0.94771 0.93577 0.89238 1.22380 1.00266 1.00824 0.99405 1.67737 1.09739 1.07365 1.31693 1.22652 0.95357 0.91359 0.96611 0.92562 0.92804 0.92813 0.91310 0.91617 0.86326 0.85989 0.86594 0.94108 0.93518 0.93437 0.94610 0.93379 0.94528 0.93605 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 37.16 0.37 -1.16 16 2 C -0.07 -0.86 6.09 -27.89 -0.17 -1.03 16 3 C -0.17 -2.65 5.15 -104.48 -0.54 -3.19 16 4 C -0.08 -1.28 9.86 -39.28 -0.39 -1.67 16 5 C -0.18 -3.20 8.25 -39.44 -0.33 -3.53 16 6 C 0.14 3.07 6.29 -82.58 -0.52 2.55 16 7 C 0.18 4.25 5.64 -5.19 -0.03 4.22 16 8 N -0.57 -14.34 2.44 -174.61 -0.43 -14.77 16 9 C -0.25 -7.03 9.48 -15.06 -0.14 -7.17 16 10 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 11 C 0.02 0.63 4.94 -17.43 -0.09 0.54 16 12 N -0.88 -25.69 11.34 55.49 0.63 -25.06 16 13 Si 0.90 22.61 29.61 -169.99 -5.03 17.58 16 14 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.14 3.01 6.44 -4.04 -0.03 2.98 16 18 C -0.17 -3.22 10.21 37.16 0.38 -2.84 16 19 N -0.46 -10.39 10.27 -9.47 -0.10 -10.49 16 20 C 0.10 1.83 10.86 -17.55 -0.19 1.64 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.12 3.20 5.33 -51.93 -0.28 2.93 16 29 H 0.04 0.90 7.76 -51.92 -0.40 0.49 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.04 0.69 7.83 -51.93 -0.41 0.29 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.87 6.51 -51.93 -0.34 0.53 16 36 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -30.36 300.92 -7.68 -38.04 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.62 Total: -1.19 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.67 Total: -8.64 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.11 Total: -50.33 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.36 -7.68 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338951721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.682 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds