Wall clock time and date at job start Mon Mar 30 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47600 * 2 1 4 4 N 1.46900 * 109.47368 * 120.00101 * 2 1 3 5 5 C 1.53000 * 109.46892 * 240.00076 * 2 1 3 6 6 H 1.08996 * 109.47534 * 305.00139 * 5 2 1 7 7 C 1.53000 * 109.47009 * 65.00466 * 5 2 1 8 8 N 1.46500 * 109.46984 * 184.99985 * 5 2 1 9 9 C 1.38857 * 119.99991 * 155.00257 * 8 5 2 10 10 C 1.39569 * 119.84070 * 359.72847 * 9 8 5 11 11 C 1.36334 * 120.15887 * 179.72049 * 10 9 8 12 12 C 1.40889 * 119.83800 * 0.55270 * 11 10 9 13 13 C 1.41138 * 120.15653 * 179.70023 * 12 11 10 14 14 H 1.08003 * 120.00122 * 204.62792 * 13 12 11 15 15 C 1.39874 * 120.00002 * 24.62859 * 13 12 11 16 16 N 1.30905 * 119.99912 * 17.95402 * 15 13 12 17 17 Si 1.86797 * 119.99885 * 197.95541 * 15 13 12 18 18 H 1.48492 * 109.47276 * 59.99649 * 17 15 13 19 19 H 1.48500 * 109.47068 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46859 * 299.99772 * 17 15 13 21 21 C 1.40881 * 119.68698 * 359.71665 * 12 11 10 22 22 C 1.36338 * 119.83772 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46579 * 299.99978 * 1 2 3 24 24 H 1.08998 * 109.47369 * 59.99465 * 1 2 3 25 25 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.00903 * 110.99535 * 59.99995 * 4 2 1 27 27 H 1.00899 * 111.00354 * 183.95388 * 4 2 1 28 28 H 1.09007 * 109.46844 * 299.99946 * 7 5 2 29 29 H 1.08994 * 109.47642 * 59.99843 * 7 5 2 30 30 H 1.09006 * 109.47095 * 180.02562 * 7 5 2 31 31 H 0.97001 * 120.00418 * 334.99883 * 8 5 2 32 32 H 1.08004 * 119.91932 * 359.97261 * 10 9 8 33 33 H 1.08007 * 120.08630 * 180.27136 * 11 10 9 34 34 H 0.96995 * 119.99449 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.07944 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.91585 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6053 -1.7197 -1.2953 7 6 1.6353 0.0690 -2.4953 8 7 3.5000 -0.8264 -1.1906 9 6 4.1515 -1.8393 -1.8818 10 6 3.4116 -2.7588 -2.6268 11 6 4.0450 -3.7525 -3.3125 12 6 5.4489 -3.8567 -3.2584 13 6 6.1110 -4.8866 -3.9606 14 1 7.0833 -5.2246 -3.6336 15 6 5.5080 -5.4695 -5.0800 16 7 4.5252 -4.8550 -5.6883 17 14 6.1052 -7.1248 -5.7067 18 1 5.9441 -8.1453 -4.6401 19 1 5.3085 -7.5206 -6.8957 20 1 7.5383 -7.0239 -6.0829 21 6 6.1888 -2.9284 -2.4998 22 6 5.5425 -1.9367 -1.8233 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6962 -1.6480 1.2226 27 1 3.0263 -0.6501 1.2559 28 1 0.5489 0.1473 -2.5389 29 1 2.0699 1.0675 -2.4494 30 1 1.9982 -0.4450 -3.3854 31 1 4.0117 -0.1884 -0.6690 32 1 2.3350 -2.6806 -2.6634 33 1 3.4715 -4.4608 -3.8922 34 1 4.1074 -5.2592 -6.4648 35 1 7.2653 -3.0026 -2.4535 36 1 6.1084 -1.2245 -1.2411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389722954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:32 Heat of formation + Delta-G solvation = 11.246024 kcal Electronic energy + Delta-G solvation = -16267.823144 eV Core-core repulsion = 13750.857080 eV Total energy + Delta-G solvation = -2516.966064 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.62076 -36.95970 -34.14936 -32.60072 -30.56792 -29.44912 -28.70688 -27.49786 -24.64781 -23.02255 -21.51692 -20.38818 -19.52531 -17.23079 -16.47047 -15.88123 -15.32285 -14.95017 -14.42762 -13.89858 -13.51844 -13.19717 -12.70750 -12.54766 -12.16790 -12.11987 -11.90835 -11.72447 -11.55693 -11.34003 -11.15296 -11.01980 -10.81169 -10.68276 -10.45666 -9.72361 -9.31336 -9.25812 -8.69773 -8.48345 -7.51453 -6.66193 -6.41586 -4.05199 2.91517 3.08026 3.13159 3.16408 3.34341 4.04047 4.18479 4.67308 4.76302 4.88387 5.20733 5.38161 5.52448 5.66377 5.73720 5.82145 5.96698 6.03862 6.08546 6.21111 6.25198 6.35545 6.54800 6.91278 6.92507 7.18238 7.19010 7.33927 7.48483 7.54261 7.66888 7.81853 8.13219 8.27093 8.47296 8.67012 8.77618 9.04318 9.13247 10.35758 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.005488 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.890941 B = 5100.453634 C = 5376.074388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.841 5.841 5 C 0.125 3.875 6 H 0.070 0.930 7 C -0.167 4.167 8 N -0.757 5.757 9 C 0.091 3.909 10 C -0.163 4.163 11 C -0.125 4.125 12 C 0.075 3.925 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.188 4.188 22 C -0.159 4.159 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.339 0.661 27 H 0.342 0.658 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.381 0.619 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.277 0.723 35 H 0.091 0.909 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 5.987 6.442 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.095 0.905 4 N -0.369 5.369 5 C 0.017 3.983 6 H 0.088 0.912 7 C -0.227 4.227 8 N -0.392 5.392 9 C -0.005 4.005 10 C -0.185 4.185 11 C -0.145 4.145 12 C 0.072 3.928 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.435 5.435 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.208 4.208 22 C -0.181 4.181 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.213 0.787 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.770 6.441 6.589 11.434 hybrid contribution 0.975 -1.094 -1.066 1.812 sum -5.795 5.347 5.523 9.627 Atomic orbital electron populations 1.21803 0.94210 1.02115 1.01938 1.21697 0.95622 0.98061 0.87911 0.90477 1.59117 1.16647 1.21379 1.39733 1.21450 0.82979 0.99117 0.94775 0.91158 1.22318 1.00236 1.00483 0.99641 1.43927 1.03620 1.33829 1.57842 1.17318 0.91001 0.92422 0.99784 1.20109 0.96988 0.98566 1.02803 1.20938 0.94795 0.98641 1.00139 1.17493 0.91667 0.91814 0.91788 1.19347 1.04172 1.16554 1.09829 0.90975 1.25796 0.94253 0.98109 0.95857 1.69848 1.20882 1.36255 1.16505 0.86460 0.79550 0.82761 0.78404 1.19069 1.20565 1.19246 1.20541 0.97477 0.97562 1.05222 1.19806 0.91892 1.01220 1.05150 0.92035 0.91899 0.92698 0.84909 0.84472 0.92682 0.93079 0.91960 0.78676 0.89436 0.86451 0.91258 0.89102 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.24 37.16 0.34 -1.12 16 2 C 0.08 0.94 3.04 -67.71 -0.21 0.73 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 N -0.84 -10.00 9.18 -4.66 -0.04 -10.05 16 5 C 0.13 1.79 2.00 -67.93 -0.14 1.66 16 6 H 0.07 1.12 6.44 -51.93 -0.33 0.79 16 7 C -0.17 -2.36 9.17 37.16 0.34 -2.01 16 8 N -0.76 -12.51 4.63 -52.03 -0.24 -12.75 16 9 C 0.09 1.94 6.65 -83.69 -0.56 1.39 16 10 C -0.16 -3.77 8.76 -39.77 -0.35 -4.12 16 11 C -0.13 -3.28 8.64 -39.26 -0.34 -3.62 16 12 C 0.08 2.04 5.57 -106.79 -0.60 1.44 16 13 C -0.47 -12.75 9.03 -37.87 -0.34 -13.10 16 14 H 0.07 1.90 7.91 -52.48 -0.41 1.48 16 15 C 0.08 1.94 5.13 -17.33 -0.09 1.85 16 16 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 17 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.19 -4.65 9.74 -39.27 -0.38 -5.04 16 22 C -0.16 -3.53 9.82 -39.77 -0.39 -3.92 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.34 4.06 9.00 -39.29 -0.35 3.71 16 27 H 0.34 4.13 8.08 -39.29 -0.32 3.81 16 28 H 0.05 0.65 6.57 -51.92 -0.34 0.31 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 31 H 0.38 5.70 8.16 -40.82 -0.33 5.37 16 32 H 0.09 1.87 6.06 -52.48 -0.32 1.55 16 33 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 34 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 36 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -27.40 292.08 -8.15 -35.55 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.15 Total: 15.37 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.70 Total: -25.85 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.33 Total: -43.71 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.40 -8.15 -35.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389722954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.797 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds