Wall clock time and date at job start Mon Mar 30 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47600 * 2 1 4 4 N 1.46900 * 109.47368 * 120.00101 * 2 1 3 5 5 C 1.53000 * 109.46892 * 240.00076 * 2 1 3 6 6 H 1.08996 * 109.47534 * 305.00139 * 5 2 1 7 7 C 1.53000 * 109.47009 * 65.00466 * 5 2 1 8 8 N 1.46500 * 109.46984 * 184.99985 * 5 2 1 9 9 C 1.38857 * 119.99991 * 155.00257 * 8 5 2 10 10 C 1.39569 * 119.84070 * 359.72847 * 9 8 5 11 11 C 1.36334 * 120.15887 * 179.72049 * 10 9 8 12 12 C 1.40889 * 119.83800 * 0.55270 * 11 10 9 13 13 C 1.41138 * 120.15653 * 179.70023 * 12 11 10 14 14 H 1.08003 * 120.00122 * 204.62792 * 13 12 11 15 15 C 1.39874 * 120.00002 * 24.62859 * 13 12 11 16 16 N 1.30905 * 119.99912 * 17.95402 * 15 13 12 17 17 Si 1.86797 * 119.99885 * 197.95541 * 15 13 12 18 18 H 1.48492 * 109.47276 * 59.99649 * 17 15 13 19 19 H 1.48500 * 109.47068 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46859 * 299.99772 * 17 15 13 21 21 C 1.40881 * 119.68698 * 359.71665 * 12 11 10 22 22 C 1.36338 * 119.83772 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46579 * 299.99978 * 1 2 3 24 24 H 1.08998 * 109.47369 * 59.99465 * 1 2 3 25 25 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.00903 * 110.99535 * 59.99995 * 4 2 1 27 27 H 1.00899 * 111.00354 * 183.95388 * 4 2 1 28 28 H 1.09007 * 109.46844 * 299.99946 * 7 5 2 29 29 H 1.08994 * 109.47642 * 59.99843 * 7 5 2 30 30 H 1.09006 * 109.47095 * 180.02562 * 7 5 2 31 31 H 0.97001 * 120.00418 * 334.99883 * 8 5 2 32 32 H 1.08004 * 119.91932 * 359.97261 * 10 9 8 33 33 H 1.08007 * 120.08630 * 180.27136 * 11 10 9 34 34 H 0.96995 * 119.99449 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.07944 * 179.97438 * 21 12 11 36 36 H 1.08001 * 119.91585 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6053 -1.7197 -1.2953 7 6 1.6353 0.0690 -2.4953 8 7 3.5000 -0.8264 -1.1906 9 6 4.1515 -1.8393 -1.8818 10 6 3.4116 -2.7588 -2.6268 11 6 4.0450 -3.7525 -3.3125 12 6 5.4489 -3.8567 -3.2584 13 6 6.1110 -4.8866 -3.9606 14 1 7.0833 -5.2246 -3.6336 15 6 5.5080 -5.4695 -5.0800 16 7 4.5252 -4.8550 -5.6883 17 14 6.1052 -7.1248 -5.7067 18 1 5.9441 -8.1453 -4.6401 19 1 5.3085 -7.5206 -6.8957 20 1 7.5383 -7.0239 -6.0829 21 6 6.1888 -2.9284 -2.4998 22 6 5.5425 -1.9367 -1.8233 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6962 -1.6480 1.2226 27 1 3.0263 -0.6501 1.2559 28 1 0.5489 0.1473 -2.5389 29 1 2.0699 1.0675 -2.4494 30 1 1.9982 -0.4450 -3.3854 31 1 4.0117 -0.1884 -0.6690 32 1 2.3350 -2.6806 -2.6634 33 1 3.4715 -4.4608 -3.8922 34 1 4.1074 -5.2592 -6.4648 35 1 7.2653 -3.0026 -2.4535 36 1 6.1084 -1.2245 -1.2411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389722954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:32 Heat of formation + Delta-G solvation = -6.226806 kcal Electronic energy + Delta-G solvation = -16268.580823 eV Core-core repulsion = 13750.857080 eV Total energy + Delta-G solvation = -2517.723743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14694 -38.44288 -35.81634 -34.18741 -31.87885 -31.29083 -30.21640 -28.72255 -26.37978 -24.32090 -23.21538 -22.02352 -20.89947 -19.16924 -17.97438 -17.14479 -16.77545 -16.48069 -15.82664 -15.35104 -14.94641 -14.69878 -14.33863 -14.01758 -13.72562 -13.64120 -13.17591 -13.16370 -13.04255 -12.74622 -12.54362 -12.34451 -12.27743 -12.23893 -11.77352 -11.58621 -11.16127 -11.08557 -10.35177 -9.60073 -9.41511 -8.56523 -8.17670 -6.02104 1.10112 1.17671 1.38967 1.49839 1.58996 2.26219 2.80787 2.84382 3.72494 3.82229 3.84907 4.16831 4.38984 4.41393 4.48882 4.53931 4.60065 4.77552 4.98870 5.01059 5.04027 5.10235 5.16647 5.25915 5.32839 5.42545 5.45912 5.68592 5.79801 5.94793 6.17498 6.23393 6.38027 6.52906 6.65852 6.86342 7.07172 7.13459 7.30019 8.46772 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.043884 B = 0.005488 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.890941 B = 5100.453634 C = 5376.074388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.086 0.914 4 N -0.840 5.840 5 C 0.124 3.876 6 H 0.055 0.945 7 C -0.163 4.163 8 N -0.744 5.744 9 C 0.116 3.884 10 C -0.172 4.172 11 C -0.145 4.145 12 C 0.035 3.965 13 C -0.508 4.508 14 H 0.068 0.932 15 C 0.032 3.968 16 N -0.842 5.842 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.197 4.197 22 C -0.166 4.166 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.339 0.661 27 H 0.342 0.658 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.394 0.606 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.095 0.905 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 7.148 7.516 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.104 0.896 4 N -0.368 5.368 5 C 0.016 3.984 6 H 0.073 0.927 7 C -0.223 4.223 8 N -0.378 5.378 9 C 0.017 3.983 10 C -0.194 4.194 11 C -0.165 4.165 12 C 0.032 3.968 13 C -0.539 4.539 14 H 0.086 0.914 15 C -0.179 4.179 16 N -0.471 5.471 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.217 4.217 22 C -0.188 4.188 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.228 0.772 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.446 7.646 7.698 13.159 hybrid contribution 1.103 -1.271 -1.267 2.106 sum -6.343 6.376 6.431 11.057 Atomic orbital electron populations 1.21801 0.92820 1.02325 1.02885 1.21669 0.96616 0.97876 0.86152 0.89603 1.59142 1.16643 1.21452 1.39534 1.21635 0.81242 0.98926 0.96586 0.92655 1.22268 1.01948 1.00321 0.97714 1.43941 1.04842 1.32492 1.56571 1.17387 0.90928 0.92087 0.97898 1.20227 0.97850 0.98414 1.02894 1.20861 0.94708 0.99641 1.01286 1.17814 0.92378 0.93159 0.93438 1.19584 1.04736 1.18315 1.11265 0.91424 1.26609 0.94309 1.01462 0.95561 1.69917 1.22180 1.37833 1.17143 0.85354 0.79200 0.77735 0.77969 1.18736 1.19452 1.18613 1.20753 0.97910 0.97857 1.05162 1.20104 0.92543 1.01118 1.05009 0.91276 0.90797 0.92901 0.84926 0.84520 0.90205 0.92097 0.95204 0.77158 0.88047 0.88530 0.90773 0.88642 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.24 71.98 0.67 -1.77 16 2 C 0.09 1.82 3.04 44.92 0.14 1.96 16 3 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 4 N -0.84 -17.66 9.18 -168.67 -1.55 -19.21 16 5 C 0.12 3.25 2.00 44.99 0.09 3.34 16 6 H 0.06 1.66 6.44 -2.39 -0.02 1.65 16 7 C -0.16 -4.21 9.17 71.98 0.66 -3.55 16 8 N -0.74 -22.74 4.63 -318.54 -1.47 -24.22 16 9 C 0.12 4.79 6.65 38.67 0.26 5.05 16 10 C -0.17 -7.99 8.76 22.15 0.19 -7.80 16 11 C -0.14 -7.86 8.64 22.47 0.19 -7.66 16 12 C 0.03 1.96 5.57 -21.27 -0.12 1.84 16 13 C -0.51 -28.78 9.03 23.38 0.21 -28.57 16 14 H 0.07 3.71 7.91 -2.91 -0.02 3.69 16 15 C 0.03 1.72 5.13 85.23 0.44 2.16 16 16 N -0.84 -46.47 10.96 21.82 0.24 -46.23 16 17 Si 0.98 40.36 29.60 68.60 2.03 42.39 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C -0.20 -9.85 9.74 22.47 0.22 -9.63 16 22 C -0.17 -7.15 9.82 22.15 0.22 -6.93 16 23 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.07 1.12 6.56 -2.39 -0.02 1.11 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.34 7.33 9.00 -89.69 -0.81 6.52 16 27 H 0.34 7.27 8.08 -89.69 -0.72 6.54 16 28 H 0.08 1.66 6.57 -2.38 -0.02 1.65 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 0.96 7.69 -2.38 -0.02 0.94 16 31 H 0.39 10.44 8.16 -92.71 -0.76 9.68 16 32 H 0.10 4.34 6.06 -2.91 -0.02 4.32 16 33 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 34 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 35 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -60.67 292.08 1.23 -59.44 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -1.18 Total: 39.40 kcal Atomic # 6 Polarization: -54.73 SS G_CDS: 3.16 Total: -51.57 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -2.78 Total: -89.66 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -60.67 1.23 -59.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389722954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.218 kcal (2) G-P(sol) polarization free energy of solvation -60.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds