Wall clock time and date at job start Mon Mar 30 2020 04:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47438 * 2 1 4 4 C 1.52999 * 109.47058 * 119.99954 * 2 1 3 5 5 C 1.50699 * 109.47169 * 185.00046 * 4 2 1 6 6 H 1.08002 * 120.00101 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00163 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99749 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99936 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46856 * 120.00121 * 9 7 5 12 12 H 1.48501 * 109.47022 * 239.99927 * 9 7 5 13 13 N 1.46896 * 109.47074 * 239.99815 * 2 1 3 14 14 C 1.46905 * 111.00026 * 84.99990 * 13 2 1 15 15 C 1.52999 * 109.46937 * 180.02562 * 14 13 2 16 16 C 1.50707 * 109.46798 * 180.02562 * 15 14 13 17 17 C 1.38227 * 119.62024 * 124.97813 * 16 15 14 18 18 C 1.38627 * 119.15702 * 179.78495 * 17 16 15 19 19 C 1.38669 * 118.42389 * 0.47826 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.49762 * 19 18 17 21 21 N 1.31856 * 119.61172 * 304.99564 * 16 15 14 22 22 H 1.08997 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47162 * 300.00333 * 1 2 3 24 24 H 1.09007 * 109.47255 * 60.00071 * 1 2 3 25 25 H 1.09003 * 109.47318 * 304.99894 * 4 2 1 26 26 H 1.09003 * 109.47007 * 64.99598 * 4 2 1 27 27 H 0.97000 * 119.99736 * 180.02562 * 8 7 5 28 28 H 1.00907 * 111.00202 * 208.95698 * 13 2 1 29 29 H 1.08996 * 109.46637 * 60.00063 * 14 13 2 30 30 H 1.08994 * 109.46816 * 299.99868 * 14 13 2 31 31 H 1.08996 * 109.47454 * 60.00504 * 15 14 13 32 32 H 1.09007 * 109.47108 * 299.99872 * 15 14 13 33 33 H 1.07998 * 120.41916 * 359.97438 * 17 16 15 34 34 H 1.08008 * 120.78688 * 180.22921 * 18 17 16 35 35 H 1.08002 * 120.42244 * 179.78279 * 19 18 17 36 36 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1926 2.3584 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4367 10 1 6.5838 -0.2930 1.2650 11 1 6.4869 -0.3648 3.6873 12 1 6.6853 -2.4226 2.4197 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 6 2.6600 0.4056 -4.7515 17 6 3.8486 0.5557 -5.4409 18 6 3.8964 1.4185 -6.5248 19 6 2.7444 2.1088 -6.8703 20 6 1.5924 1.9072 -6.1343 21 7 1.5823 1.0747 -5.1115 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.6054 -0.2617 2.1370 26 1 1.7515 -1.7715 1.2056 27 1 4.0606 -2.2430 4.0359 28 1 2.9173 -1.1206 -1.0287 29 1 2.7588 1.0461 -2.1182 30 1 1.0870 0.6162 -2.5525 31 1 1.9182 -1.3566 -3.8030 32 1 3.5903 -0.9274 -3.3690 33 1 4.7281 0.0054 -5.1407 34 1 4.8103 1.5530 -7.0845 35 1 2.7463 2.7919 -7.7069 36 1 0.6899 2.4379 -6.3995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389891177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:35 Heat of formation + Delta-G solvation = -5.595681 kcal Electronic energy + Delta-G solvation = -15749.697621 eV Core-core repulsion = 13232.001246 eV Total energy + Delta-G solvation = -2517.696375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08989 -38.40766 -35.38534 -34.23300 -33.24332 -31.81688 -29.31656 -28.62090 -25.30084 -24.51262 -23.90155 -22.10896 -21.10306 -18.51724 -17.72930 -17.14663 -16.88793 -16.50891 -16.33619 -15.92338 -14.94074 -14.83009 -14.55574 -14.18589 -13.86177 -13.63310 -13.44828 -13.16801 -13.03584 -12.62354 -12.58388 -12.38226 -12.29961 -12.26962 -11.82031 -11.24611 -11.00569 -10.77407 -10.58019 -10.29472 -9.85080 -9.22109 -8.19016 -6.29932 0.20524 0.40906 1.40020 1.40487 1.52821 2.40801 2.86993 3.11699 3.28959 3.54903 3.92759 4.05469 4.17681 4.26620 4.28453 4.34695 4.39206 4.58680 4.65278 4.72595 4.77992 4.87555 4.95557 5.07177 5.15203 5.20724 5.30371 5.31437 5.33418 5.49025 5.55320 5.83564 5.84964 6.21143 6.38186 6.66068 6.84975 7.11689 7.38909 8.92972 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.005162 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.894515 B = 5422.805300 C = 6223.634392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.095 3.905 3 H 0.019 0.981 4 C 0.028 3.972 5 C -0.535 4.535 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.684 5.684 14 C 0.079 3.921 15 C -0.062 4.062 16 C 0.115 3.885 17 C -0.180 4.180 18 C -0.076 4.076 19 C -0.177 4.177 20 C 0.084 3.916 21 N -0.514 5.514 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.056 0.944 25 H -0.005 1.005 26 H 0.000 1.000 27 H 0.263 0.737 28 H 0.344 0.656 29 H 0.008 0.992 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 6.928 -20.504 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 H 0.037 0.963 4 C -0.010 4.010 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.317 5.317 14 C -0.050 4.050 15 C -0.100 4.100 16 C -0.023 4.023 17 C -0.200 4.200 18 C -0.102 4.102 19 C -0.197 4.197 20 C -0.073 4.073 21 N -0.224 5.224 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.013 0.987 26 H 0.018 0.982 27 H 0.072 0.928 28 H 0.164 0.836 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.802 6.466 -20.039 21.071 hybrid contribution 2.231 0.539 0.404 2.331 sum 1.429 7.005 -19.635 20.896 Atomic orbital electron populations 1.21704 0.94574 1.01505 1.00746 1.21422 0.95125 0.94619 0.90294 0.96265 1.19142 0.94996 0.94802 0.92035 1.21534 0.93174 1.34166 1.08419 0.92546 1.25906 1.03490 0.94717 0.95241 1.70107 1.37554 1.36689 1.12693 0.85432 0.79607 0.78016 0.78171 1.18705 1.20720 1.20264 1.60603 1.33938 1.32676 1.04443 1.21745 1.00012 0.93180 0.90096 1.20446 1.02907 0.96422 0.90228 1.21302 0.89721 0.95245 0.95994 1.22267 0.98961 1.01160 0.97578 1.22004 0.99860 0.93242 0.95059 1.22500 0.93478 1.01524 1.02163 1.23251 0.99548 0.94140 0.90367 1.67445 1.30822 1.07881 1.16289 0.92972 0.92785 0.92493 0.98665 0.98177 0.92786 0.83629 0.97374 0.91281 0.89643 0.89502 0.83421 0.81866 0.81680 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.41 71.98 0.68 -4.15 16 2 C 0.10 4.18 2.59 44.92 0.12 4.30 16 3 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.03 1.48 4.57 29.85 0.14 1.62 16 5 C -0.53 -30.05 8.12 25.60 0.21 -29.84 16 6 H 0.06 3.05 7.49 -2.91 -0.02 3.03 16 7 C 0.00 0.26 5.46 84.66 0.46 0.73 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.68 -27.41 6.31 -491.59 -3.10 -30.51 16 14 C 0.08 2.73 5.34 86.30 0.46 3.19 16 15 C -0.06 -1.76 5.87 29.85 0.18 -1.59 16 16 C 0.11 3.04 6.18 42.55 0.26 3.31 16 17 C -0.18 -3.78 9.71 22.36 0.22 -3.56 16 18 C -0.08 -1.22 10.18 22.47 0.23 -0.99 16 19 C -0.18 -2.73 10.11 22.36 0.23 -2.50 16 20 C 0.08 1.70 11.18 84.67 0.95 2.65 16 21 N -0.51 -14.10 9.88 -183.88 -1.82 -15.92 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.93 7.45 -2.38 -0.02 1.91 16 25 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.34 14.66 7.21 -89.69 -0.65 14.01 16 29 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 30 H 0.07 2.44 7.24 -2.39 -0.02 2.42 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.09 2.26 7.87 -2.38 -0.02 2.24 16 33 H 0.15 2.56 7.95 -2.91 -0.02 2.54 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.83 303.32 1.91 -64.92 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.40 Total: 18.62 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.12 Total: -26.85 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.63 Total: -102.68 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.83 1.91 -64.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389891177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.322 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds