Wall clock time and date at job start Mon Mar 30 2020 03:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47312 * 300.00563 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00315 * 3 2 1 7 7 C 1.39943 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00486 * 197.85812 * 7 2 1 9 9 C 1.41394 * 119.99812 * 17.85237 * 7 2 1 10 10 C 1.40724 * 120.24482 * 204.38006 * 9 7 2 11 11 C 1.37616 * 119.74641 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24653 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74719 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47019 * 90.00081 * 13 12 11 15 15 C 1.46900 * 110.99945 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47326 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47307 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.47177 * 179.97438 * 17 16 15 19 19 C 1.38636 * 120.50467 * 0.24928 * 12 11 10 20 20 C 1.37623 * 120.24210 * 359.44932 * 19 12 11 21 21 H 0.97003 * 119.99502 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.12869 * 0.02562 * 10 9 7 23 23 H 1.07993 * 119.87674 * 179.97438 * 11 10 9 24 24 H 1.09000 * 109.47482 * 329.99806 * 13 12 11 25 25 H 1.09006 * 109.46860 * 209.99865 * 13 12 11 26 26 H 1.00902 * 110.99879 * 303.94687 * 14 13 12 27 27 H 1.09007 * 109.47324 * 299.99763 * 15 14 13 28 28 H 1.09000 * 109.47409 * 59.99692 * 15 14 13 29 29 H 1.09005 * 109.47031 * 299.99687 * 16 15 14 30 30 H 1.08997 * 109.47458 * 59.99918 * 16 15 14 31 31 H 1.08996 * 109.46788 * 299.99751 * 17 16 15 32 32 H 1.08997 * 109.47060 * 59.99513 * 17 16 15 33 33 H 1.00894 * 111.00022 * 179.97438 * 18 17 16 34 34 H 1.00899 * 111.00015 * 303.95357 * 18 17 16 35 35 H 1.07998 * 119.87786 * 179.70118 * 19 12 11 36 36 H 1.08004 * 120.12494 * 180.27297 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2347 0.2863 9 6 1.3520 -2.4068 -0.3765 10 6 1.8258 -3.6500 0.0822 11 6 1.1799 -4.8065 -0.2905 12 6 0.0667 -4.7501 -1.1150 13 6 -0.6317 -6.0237 -1.5166 14 7 -1.6776 -6.3392 -0.5345 15 6 -2.3818 -7.5771 -0.8947 16 6 -3.4613 -7.8718 0.1486 17 6 -4.1943 -9.1615 -0.2262 18 7 -5.2305 -9.4447 0.7758 19 6 -0.4055 -3.5314 -1.5774 20 6 0.2211 -2.3617 -1.2124 21 1 -0.4849 0.8401 0.0004 22 1 2.6931 -3.6962 0.7242 23 1 1.5419 -5.7617 0.0599 24 1 0.0911 -6.8388 -1.5521 25 1 -1.0836 -5.8956 -2.5002 26 1 -1.2932 -6.3993 0.3965 27 1 -2.8459 -7.4594 -1.8739 28 1 -1.6714 -8.4032 -0.9263 29 1 -2.9976 -7.9894 1.1280 30 1 -4.1717 -7.0457 0.1797 31 1 -4.6579 -9.0443 -1.2057 32 1 -3.4837 -9.9874 -0.2571 33 1 -5.7295 -10.2922 0.5504 34 1 -4.8338 -9.4940 1.7023 35 1 -1.2706 -3.4996 -2.2231 36 1 -0.1510 -1.4130 -1.5702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399099047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:28 Heat of formation + Delta-G solvation = 0.275974 kcal Electronic energy + Delta-G solvation = -15445.484793 eV Core-core repulsion = 12928.043032 eV Total energy + Delta-G solvation = -2517.441761 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.83870 -36.64527 -34.82860 -33.50341 -30.99260 -29.33776 -28.99503 -26.24702 -23.81371 -22.42417 -21.30263 -20.91784 -19.77478 -17.26798 -16.17387 -15.93785 -15.29335 -14.81348 -14.61323 -14.22192 -13.80800 -13.72387 -13.30407 -12.71797 -12.26967 -11.95021 -11.85987 -11.68034 -11.39267 -11.28615 -11.03314 -10.87636 -10.78904 -10.42258 -10.34243 -9.55949 -9.34202 -9.10205 -8.93304 -8.01627 -7.40878 -7.27423 -6.73133 -4.32185 2.76163 3.08672 3.11210 3.14205 3.19288 3.95112 4.23239 4.56260 4.80487 4.91569 5.21967 5.34775 5.45847 5.60070 5.70742 5.75672 5.89936 5.93388 6.16944 6.25479 6.31725 6.39061 6.48290 6.88474 6.99009 7.10081 7.17866 7.32956 7.39297 7.46008 7.64824 7.76143 7.93054 8.09041 8.18581 8.33391 8.68094 8.92647 9.01303 10.21144 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.048714 B = 0.004043 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.645737 B = 6924.248660 C = 7169.843213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.214 4.214 13 C 0.125 3.875 14 N -0.684 5.684 15 C 0.059 3.941 16 C -0.117 4.117 17 C 0.063 3.937 18 N -0.852 5.852 19 C -0.079 4.079 20 C -0.167 4.167 21 H 0.280 0.720 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.339 0.661 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.339 0.661 34 H 0.340 0.660 35 H 0.087 0.913 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -11.556 -0.671 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.216 4.216 13 C -0.003 4.003 14 N -0.316 5.316 15 C -0.071 4.071 16 C -0.155 4.155 17 C -0.069 4.069 18 N -0.382 5.382 19 C -0.098 4.098 20 C -0.187 4.187 21 H 0.091 0.909 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.486 -10.298 -1.203 11.730 hybrid contribution 1.526 -0.783 0.512 1.790 sum -3.960 -11.081 -0.690 11.788 Atomic orbital electron populations 1.69848 1.07562 1.29076 1.35089 1.25914 0.94709 1.01290 0.92318 0.86294 0.80996 0.81077 0.78540 1.18449 1.19711 1.20023 1.19621 0.98111 0.91333 1.40216 0.90498 1.17631 0.91102 0.91972 0.88371 1.20925 1.03842 0.92910 1.07054 1.20347 0.95883 0.96220 0.97999 1.18910 1.00463 0.93166 1.09046 1.20555 0.90546 0.94518 0.94644 1.60598 1.31403 1.33406 1.06148 1.21888 0.95347 0.90966 0.98885 1.21552 0.97864 0.97557 0.98548 1.21767 0.92564 0.96502 0.96034 1.58678 1.30548 1.43215 1.05732 1.20506 0.97688 0.92491 0.99094 1.21316 0.99468 0.96760 1.01133 0.90933 0.89187 0.89994 0.96507 0.92022 0.84266 0.91382 0.96228 0.92413 0.90140 0.90996 0.95886 0.84881 0.84761 0.89461 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 10 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 11 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 12 C -0.21 -4.72 5.41 -104.33 -0.56 -5.28 16 13 C 0.13 2.25 5.80 -4.98 -0.03 2.23 16 14 N -0.68 -11.37 6.49 -115.06 -0.75 -12.11 16 15 C 0.06 0.78 5.68 -3.83 -0.02 0.76 16 16 C -0.12 -1.37 5.74 -26.73 -0.15 -1.53 16 17 C 0.06 0.61 6.79 -3.82 -0.03 0.58 16 18 N -0.85 -7.69 9.62 -10.37 -0.10 -7.79 16 19 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 20 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 21 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 22 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 23 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 24 H 0.02 0.28 8.08 -51.93 -0.42 -0.13 16 25 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 26 H 0.34 5.64 8.72 -39.29 -0.34 5.29 16 27 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.34 2.37 9.08 -39.29 -0.36 2.02 16 34 H 0.34 2.72 8.99 -39.29 -0.35 2.37 16 35 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -27.96 303.34 -9.57 -37.54 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.57 Total: 11.32 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.31 Total: -27.18 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.24 Total: -40.05 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.96 -9.57 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399099047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.813 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds