Wall clock time and date at job start Mon Mar 30 2020 03:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47312 * 300.00563 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00315 * 3 2 1 7 7 C 1.39943 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00486 * 197.85812 * 7 2 1 9 9 C 1.41394 * 119.99812 * 17.85237 * 7 2 1 10 10 C 1.40724 * 120.24482 * 204.38006 * 9 7 2 11 11 C 1.37616 * 119.74641 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24653 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74719 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47019 * 90.00081 * 13 12 11 15 15 C 1.46900 * 110.99945 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47326 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47307 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.47177 * 179.97438 * 17 16 15 19 19 C 1.38636 * 120.50467 * 0.24928 * 12 11 10 20 20 C 1.37623 * 120.24210 * 359.44932 * 19 12 11 21 21 H 0.97003 * 119.99502 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.12869 * 0.02562 * 10 9 7 23 23 H 1.07993 * 119.87674 * 179.97438 * 11 10 9 24 24 H 1.09000 * 109.47482 * 329.99806 * 13 12 11 25 25 H 1.09006 * 109.46860 * 209.99865 * 13 12 11 26 26 H 1.00902 * 110.99879 * 303.94687 * 14 13 12 27 27 H 1.09007 * 109.47324 * 299.99763 * 15 14 13 28 28 H 1.09000 * 109.47409 * 59.99692 * 15 14 13 29 29 H 1.09005 * 109.47031 * 299.99687 * 16 15 14 30 30 H 1.08997 * 109.47458 * 59.99918 * 16 15 14 31 31 H 1.08996 * 109.46788 * 299.99751 * 17 16 15 32 32 H 1.08997 * 109.47060 * 59.99513 * 17 16 15 33 33 H 1.00894 * 111.00022 * 179.97438 * 18 17 16 34 34 H 1.00899 * 111.00015 * 303.95357 * 18 17 16 35 35 H 1.07998 * 119.87786 * 179.70118 * 19 12 11 36 36 H 1.08004 * 120.12494 * 180.27297 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2347 0.2863 9 6 1.3520 -2.4068 -0.3765 10 6 1.8258 -3.6500 0.0822 11 6 1.1799 -4.8065 -0.2905 12 6 0.0667 -4.7501 -1.1150 13 6 -0.6317 -6.0237 -1.5166 14 7 -1.6776 -6.3392 -0.5345 15 6 -2.3818 -7.5771 -0.8947 16 6 -3.4613 -7.8718 0.1486 17 6 -4.1943 -9.1615 -0.2262 18 7 -5.2305 -9.4447 0.7758 19 6 -0.4055 -3.5314 -1.5774 20 6 0.2211 -2.3617 -1.2124 21 1 -0.4849 0.8401 0.0004 22 1 2.6931 -3.6962 0.7242 23 1 1.5419 -5.7617 0.0599 24 1 0.0911 -6.8388 -1.5521 25 1 -1.0836 -5.8956 -2.5002 26 1 -1.2932 -6.3993 0.3965 27 1 -2.8459 -7.4594 -1.8739 28 1 -1.6714 -8.4032 -0.9263 29 1 -2.9976 -7.9894 1.1280 30 1 -4.1717 -7.0457 0.1797 31 1 -4.6579 -9.0443 -1.2057 32 1 -3.4837 -9.9874 -0.2571 33 1 -5.7295 -10.2922 0.5504 34 1 -4.8338 -9.4940 1.7023 35 1 -1.2706 -3.4996 -2.2231 36 1 -0.1510 -1.4130 -1.5702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399099047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:28 Heat of formation + Delta-G solvation = -18.540952 kcal Electronic energy + Delta-G solvation = -15446.300756 eV Core-core repulsion = 12928.043032 eV Total energy + Delta-G solvation = -2518.257724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60267 -37.82258 -36.10259 -35.13049 -32.46954 -31.17099 -30.47083 -27.87139 -25.23999 -23.71449 -22.82521 -22.28272 -21.51764 -19.20963 -17.21933 -17.15756 -16.87523 -16.00404 -15.84348 -15.62028 -15.51706 -14.96912 -14.83681 -14.29660 -13.81501 -13.64047 -13.39545 -13.13124 -12.76479 -12.68631 -12.55119 -12.32224 -12.17167 -11.99092 -11.74371 -11.37827 -11.21684 -10.99483 -9.61573 -9.35556 -9.33391 -9.11667 -8.62286 -6.32188 0.95647 1.16573 1.38196 1.50125 1.53858 2.21423 2.69849 3.31370 3.73608 3.85982 4.01137 4.27095 4.32723 4.39993 4.44445 4.55970 4.60287 4.68729 4.73301 4.79666 4.85275 5.08115 5.17441 5.24622 5.32750 5.40286 5.48231 5.72886 5.95769 6.11662 6.17670 6.23889 6.31239 6.40647 6.52870 6.60612 6.72892 6.95796 7.06070 8.34652 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.048714 B = 0.004043 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.645737 B = 6924.248660 C = 7169.843213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.078 3.922 10 C -0.243 4.243 11 C -0.085 4.085 12 C -0.202 4.202 13 C 0.132 3.868 14 N -0.699 5.699 15 C 0.063 3.937 16 C -0.110 4.110 17 C 0.068 3.932 18 N -0.863 5.863 19 C -0.087 4.087 20 C -0.192 4.192 21 H 0.287 0.713 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.339 0.661 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.351 0.649 34 H 0.346 0.654 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 -13.036 -0.766 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.204 4.204 13 C 0.004 3.996 14 N -0.331 5.331 15 C -0.066 4.066 16 C -0.148 4.148 17 C -0.064 4.064 18 N -0.394 5.394 19 C -0.106 4.106 20 C -0.211 4.211 21 H 0.098 0.902 22 H 0.114 0.886 23 H 0.134 0.866 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.618 -11.810 -1.297 13.142 hybrid contribution 1.484 -0.493 0.536 1.653 sum -4.135 -12.303 -0.760 13.001 Atomic orbital electron populations 1.69903 1.09053 1.30419 1.35793 1.26781 0.95483 1.04588 0.91268 0.85156 0.79389 0.76174 0.78944 1.18166 1.18878 1.19029 1.19858 0.98304 0.92648 1.42352 0.90776 1.17983 0.91948 0.93171 0.89321 1.21156 1.04461 0.93214 1.07471 1.20688 0.95481 0.96832 0.97317 1.19365 0.99798 0.94261 1.06954 1.20463 0.91182 0.92847 0.95147 1.60505 1.30944 1.35827 1.05804 1.21916 0.95556 0.89849 0.99306 1.21459 0.97129 0.97888 0.98349 1.21670 0.92838 0.95711 0.96140 1.58647 1.30594 1.44206 1.05989 1.20743 0.97947 0.92629 0.99292 1.21273 1.00425 0.97011 1.02428 0.90213 0.88607 0.86636 0.94579 0.91364 0.84329 0.91131 0.94645 0.92237 0.92312 0.90977 0.94598 0.83527 0.84150 0.88171 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.65 10.95 21.83 0.24 -44.41 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 39.17 29.60 68.60 2.03 41.20 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.36 5.57 -21.29 -0.12 4.24 16 10 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 11 C -0.08 -3.68 9.67 22.22 0.21 -3.47 16 12 C -0.20 -8.61 5.41 -19.67 -0.11 -8.71 16 13 C 0.13 4.38 5.80 85.56 0.50 4.87 16 14 N -0.70 -21.57 6.49 -517.93 -3.36 -24.93 16 15 C 0.06 1.48 5.68 86.30 0.49 1.97 16 16 C -0.11 -2.36 5.74 30.59 0.18 -2.18 16 17 C 0.07 1.15 6.79 86.30 0.59 1.74 16 18 N -0.86 -13.77 9.62 -186.71 -1.80 -15.56 16 19 C -0.09 -4.19 9.67 22.22 0.21 -3.97 16 20 C -0.19 -10.48 8.70 22.73 0.20 -10.28 16 21 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 22 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 23 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 24 H 0.04 1.08 8.08 -2.39 -0.02 1.06 16 25 H 0.07 2.19 8.08 -2.38 -0.02 2.18 16 26 H 0.34 10.48 8.72 -89.69 -0.78 9.70 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.35 4.15 9.08 -89.70 -0.81 3.33 16 34 H 0.35 4.84 8.99 -89.69 -0.81 4.04 16 35 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 Total: -1.00 -60.97 303.34 -1.18 -62.16 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -1.32 Total: 34.87 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 3.02 Total: -53.31 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -4.92 Total: -84.91 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -60.97 -1.18 -62.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399099047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.615 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds