Wall clock time and date at job start Mon Mar 30 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47255 * 2 1 4 4 C 1.36941 * 120.00472 * 275.31341 * 3 2 1 5 5 H 1.07992 * 119.99753 * 37.57218 * 4 3 2 6 6 C 1.38816 * 119.99798 * 217.57740 * 4 3 2 7 7 N 1.31616 * 120.00221 * 21.42501 * 6 4 3 8 8 Si 1.86799 * 119.99501 * 201.43271 * 6 4 3 9 9 H 1.48499 * 109.47179 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47142 * 119.99974 * 8 6 4 11 11 H 1.48501 * 109.46723 * 239.99830 * 8 6 4 12 12 C 1.46504 * 119.99641 * 95.31106 * 3 2 1 13 13 C 1.53003 * 109.47027 * 269.99874 * 12 3 2 14 14 C 1.50701 * 109.46936 * 180.02562 * 13 12 3 15 15 C 1.38230 * 119.61726 * 125.00254 * 14 13 12 16 16 C 1.38626 * 119.16062 * 179.97438 * 15 14 13 17 17 C 1.38680 * 118.42180 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.41662 * 180.02562 * 17 16 15 19 19 C 1.38176 * 119.15955 * 359.97438 * 17 16 15 20 20 N 1.31851 * 119.61939 * 304.72698 * 14 13 12 21 21 H 1.09004 * 109.46991 * 59.99870 * 1 2 3 22 22 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47332 * 299.99503 * 1 2 3 24 24 H 1.09010 * 109.47040 * 240.00182 * 2 1 3 25 25 H 1.09000 * 109.47306 * 120.00515 * 2 1 3 26 26 H 0.97000 * 119.99799 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47292 * 150.00485 * 12 3 2 28 28 H 1.08993 * 109.47185 * 30.00246 * 12 3 2 29 29 H 1.08993 * 109.47442 * 300.00215 * 13 12 3 30 30 H 1.09005 * 109.46989 * 60.00509 * 13 12 3 31 31 H 1.07998 * 120.41638 * 359.95734 * 15 14 13 32 32 H 1.07998 * 120.79234 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47008 * 89.99828 * 18 17 16 34 34 H 1.09001 * 109.46867 * 209.99459 * 18 17 16 35 35 H 1.08998 * 109.47566 * 329.99682 * 18 17 16 36 36 H 1.07999 * 119.61489 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6490 8 14 3.0992 4.2798 -2.6581 9 1 1.7774 4.2137 -3.3318 10 1 3.2549 5.6024 -2.0011 11 1 4.1765 4.0967 -3.6636 12 6 2.3732 2.0325 1.2634 13 6 1.1426 2.7381 1.8367 14 6 1.5078 3.4087 3.1359 15 6 1.2673 4.7602 3.2983 16 6 1.6065 5.3673 4.4976 17 6 2.1780 4.5890 5.4929 18 6 2.5637 5.2025 6.8142 19 6 2.3884 3.2436 5.2581 20 7 2.0481 2.6984 4.1065 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 5.0488 3.4032 -0.7829 27 1 3.1617 2.7640 1.0861 28 1 2.7255 1.2832 1.9721 29 1 0.7903 3.4875 1.1279 30 1 0.3541 2.0067 2.0140 31 1 0.8210 5.3359 2.5010 32 1 1.4299 6.4213 4.6530 33 1 1.7220 5.1387 7.5039 34 1 3.4155 4.6643 7.2299 35 1 2.8324 6.2482 6.6647 36 1 2.8327 2.6306 6.0283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399783360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:56 Heat of formation + Delta-G solvation = 38.486193 kcal Electronic energy + Delta-G solvation = -16322.989600 eV Core-core repulsion = 13807.204759 eV Total energy + Delta-G solvation = -2515.784841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92524 -36.13730 -33.80388 -31.96599 -31.78752 -30.29831 -28.36417 -26.08488 -24.25208 -23.33008 -22.14511 -20.68897 -19.96664 -16.62661 -16.28136 -15.71451 -14.83216 -14.78249 -14.20810 -13.82648 -13.69374 -13.02464 -12.95987 -12.68514 -12.47140 -12.25622 -12.09137 -11.73054 -11.45259 -11.15254 -11.01781 -10.73061 -10.56326 -10.38767 -9.99347 -9.62152 -9.53435 -9.44609 -8.94312 -8.40309 -8.35368 -6.48313 -5.71541 -3.30788 1.44599 1.60863 3.36857 3.45700 3.48500 4.12564 4.51825 4.73546 4.96092 5.01316 5.16891 5.24900 5.39500 5.54013 5.62362 5.68452 5.81450 5.98574 6.06995 6.11422 6.25607 6.38277 6.45881 6.48411 6.56807 6.60696 6.75836 6.87464 6.99950 7.08313 7.22756 7.30671 7.80492 7.90291 8.44312 8.59183 9.26886 9.89785 10.49354 11.27089 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.007339 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.816558 B = 3814.391243 C = 4549.182982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.586 5.586 4 C -0.258 4.258 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.159 3.841 13 C -0.092 4.092 14 C 0.151 3.849 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.165 4.165 18 C -0.103 4.103 19 C 0.101 3.899 20 N -0.477 5.477 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.253 0.747 27 H 0.090 0.910 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 3.743 11.352 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.388 4.388 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.032 3.968 13 C -0.132 4.132 14 C 0.013 3.987 15 C -0.192 4.192 16 C -0.103 4.103 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.057 4.057 20 N -0.186 5.186 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.779 2.906 11.177 12.498 hybrid contribution -0.180 1.819 -0.481 1.890 sum -4.958 4.725 10.695 12.700 Atomic orbital electron populations 1.22365 1.00203 0.98879 1.01095 1.20845 0.91646 0.87417 0.98720 1.43831 1.75919 1.08236 1.02593 1.19044 1.04546 1.21057 0.94176 0.92271 1.25196 0.94261 1.01395 0.98038 1.70031 1.03208 1.37166 1.42345 0.86389 0.77688 0.82376 0.81340 1.20038 1.21510 1.21656 1.20804 0.93761 0.96798 0.85410 1.21423 1.02305 0.99887 0.89619 1.21685 0.91502 0.90655 0.94864 1.22059 1.02642 0.96248 0.98217 1.21391 0.96357 0.99651 0.92919 1.20798 1.02660 0.95714 0.97496 1.20632 1.01318 1.00565 0.93527 1.22617 0.96536 0.92012 0.94556 1.67551 1.10585 1.39929 1.00496 0.93309 0.94641 0.93757 0.93966 0.94697 0.93708 0.89200 0.94722 0.90885 0.91525 0.85068 0.85552 0.91527 0.91513 0.91805 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 3.10 6.44 -4.05 -0.03 3.07 16 3 N -0.59 -14.95 2.43 -173.24 -0.42 -15.37 16 4 C -0.26 -7.12 9.45 -15.06 -0.14 -7.27 16 5 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.23 16 7 N -0.89 -26.01 11.47 55.49 0.64 -25.37 16 8 Si 0.89 21.63 29.60 -169.99 -5.03 16.60 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.16 3.90 5.19 -4.04 -0.02 3.88 16 13 C -0.09 -1.91 5.94 -27.88 -0.17 -2.08 16 14 C 0.15 2.88 6.17 -82.59 -0.51 2.37 16 15 C -0.17 -2.83 9.71 -39.44 -0.38 -3.22 16 16 C -0.08 -1.09 9.86 -39.28 -0.39 -1.47 16 17 C -0.16 -2.22 5.90 -104.48 -0.62 -2.84 16 18 C -0.10 -0.98 10.04 36.00 0.36 -0.62 16 19 C 0.10 1.55 10.86 -17.55 -0.19 1.36 16 20 N -0.48 -9.00 9.89 -9.47 -0.09 -9.10 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.82 6.64 -51.93 -0.34 0.48 16 24 H 0.04 0.95 8.08 -51.92 -0.42 0.53 16 25 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 27 H 0.09 2.51 5.52 -51.93 -0.29 2.22 16 28 H 0.03 0.86 7.67 -51.93 -0.40 0.46 16 29 H 0.07 1.54 7.87 -51.93 -0.41 1.13 16 30 H 0.07 1.35 6.64 -51.93 -0.34 1.00 16 31 H 0.13 1.97 7.95 -52.49 -0.42 1.55 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -30.52 300.61 -7.70 -38.22 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.53 Total: -0.17 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -1.79 Total: -9.35 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.12 Total: -49.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.52 -7.70 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399783360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.711 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds