Wall clock time and date at job start Mon Mar 30 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47255 * 2 1 4 4 C 1.36941 * 120.00472 * 275.31341 * 3 2 1 5 5 H 1.07992 * 119.99753 * 37.57218 * 4 3 2 6 6 C 1.38816 * 119.99798 * 217.57740 * 4 3 2 7 7 N 1.31616 * 120.00221 * 21.42501 * 6 4 3 8 8 Si 1.86799 * 119.99501 * 201.43271 * 6 4 3 9 9 H 1.48499 * 109.47179 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47142 * 119.99974 * 8 6 4 11 11 H 1.48501 * 109.46723 * 239.99830 * 8 6 4 12 12 C 1.46504 * 119.99641 * 95.31106 * 3 2 1 13 13 C 1.53003 * 109.47027 * 269.99874 * 12 3 2 14 14 C 1.50701 * 109.46936 * 180.02562 * 13 12 3 15 15 C 1.38230 * 119.61726 * 125.00254 * 14 13 12 16 16 C 1.38626 * 119.16062 * 179.97438 * 15 14 13 17 17 C 1.38680 * 118.42180 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.41662 * 180.02562 * 17 16 15 19 19 C 1.38176 * 119.15955 * 359.97438 * 17 16 15 20 20 N 1.31851 * 119.61939 * 304.72698 * 14 13 12 21 21 H 1.09004 * 109.46991 * 59.99870 * 1 2 3 22 22 H 1.08998 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47332 * 299.99503 * 1 2 3 24 24 H 1.09010 * 109.47040 * 240.00182 * 2 1 3 25 25 H 1.09000 * 109.47306 * 120.00515 * 2 1 3 26 26 H 0.97000 * 119.99799 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47292 * 150.00485 * 12 3 2 28 28 H 1.08993 * 109.47185 * 30.00246 * 12 3 2 29 29 H 1.08993 * 109.47442 * 300.00215 * 13 12 3 30 30 H 1.09005 * 109.46989 * 60.00509 * 13 12 3 31 31 H 1.07998 * 120.41638 * 359.95734 * 15 14 13 32 32 H 1.07998 * 120.79234 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47008 * 89.99828 * 18 17 16 34 34 H 1.09001 * 109.46867 * 209.99459 * 18 17 16 35 35 H 1.08998 * 109.47566 * 329.99682 * 18 17 16 36 36 H 1.07999 * 119.61489 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6490 8 14 3.0992 4.2798 -2.6581 9 1 1.7774 4.2137 -3.3318 10 1 3.2549 5.6024 -2.0011 11 1 4.1765 4.0967 -3.6636 12 6 2.3732 2.0325 1.2634 13 6 1.1426 2.7381 1.8367 14 6 1.5078 3.4087 3.1359 15 6 1.2673 4.7602 3.2983 16 6 1.6065 5.3673 4.4976 17 6 2.1780 4.5890 5.4929 18 6 2.5637 5.2025 6.8142 19 6 2.3884 3.2436 5.2581 20 7 2.0481 2.6984 4.1065 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 5.0488 3.4032 -0.7829 27 1 3.1617 2.7640 1.0861 28 1 2.7255 1.2832 1.9721 29 1 0.7903 3.4875 1.1279 30 1 0.3541 2.0067 2.0140 31 1 0.8210 5.3359 2.5010 32 1 1.4299 6.4213 4.6530 33 1 1.7220 5.1387 7.5039 34 1 3.4155 4.6643 7.2299 35 1 2.8324 6.2482 6.6647 36 1 2.8327 2.6306 6.0283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399783360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:55 Heat of formation + Delta-G solvation = 21.385517 kcal Electronic energy + Delta-G solvation = -16323.731141 eV Core-core repulsion = 13807.204759 eV Total energy + Delta-G solvation = -2516.526382 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16692 -38.01115 -35.07665 -33.81482 -33.26596 -31.74404 -30.05657 -27.50796 -26.01284 -24.68564 -23.57469 -22.18508 -21.77945 -18.61370 -17.57701 -17.11721 -16.68420 -15.97782 -15.83502 -15.57083 -15.19738 -14.52950 -14.14623 -14.12896 -13.77833 -13.54783 -13.45436 -13.19115 -13.03786 -12.94060 -12.62209 -12.43838 -12.30988 -12.17731 -11.94155 -11.50729 -11.32696 -10.67502 -10.52749 -10.22163 -9.59251 -8.54709 -7.80210 -5.45454 0.22127 0.42761 1.44182 1.46728 1.57931 2.50718 2.87502 3.24038 3.47100 3.68433 3.97368 4.02353 4.13079 4.17164 4.41345 4.52886 4.61271 4.69647 4.78442 4.84229 4.85012 4.87645 4.94521 5.06789 5.11203 5.23619 5.25133 5.30693 5.38725 5.44297 5.58266 5.68739 5.82318 5.91313 6.47689 7.17024 7.18291 7.87484 8.42402 9.14762 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.007339 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.816558 B = 3814.391243 C = 4549.182982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.604 5.604 4 C -0.265 4.265 5 H 0.057 0.943 6 C -0.039 4.039 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.291 1.291 12 C 0.171 3.829 13 C -0.073 4.073 14 C 0.115 3.885 15 C -0.181 4.181 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.101 4.101 19 C 0.083 3.917 20 N -0.510 5.510 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.250 0.750 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 5.083 12.746 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 N -0.325 5.325 4 C -0.395 4.395 5 H 0.075 0.925 6 C -0.236 4.236 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.044 3.956 13 C -0.113 4.113 14 C -0.022 4.022 15 C -0.200 4.200 16 C -0.103 4.103 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.074 4.074 20 N -0.219 5.219 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.696 4.233 12.576 14.440 hybrid contribution 0.126 1.358 -0.783 1.572 sum -5.570 5.590 11.793 14.190 Atomic orbital electron populations 1.22157 0.97285 1.00839 1.00663 1.20986 0.93855 0.85812 0.98464 1.44085 1.76400 1.09602 1.02410 1.19265 1.04209 1.21338 0.94738 0.92491 1.25929 0.93880 1.03472 1.00283 1.70177 1.03889 1.38052 1.44291 0.85375 0.77877 0.79368 0.78862 1.18875 1.21421 1.21745 1.20532 0.94507 0.95620 0.84920 1.21021 1.00278 0.99310 0.90697 1.21429 0.94313 0.91906 0.94576 1.22204 1.02783 0.95288 0.99772 1.21824 0.95299 1.01396 0.91791 1.21285 1.00111 0.94876 0.98976 1.20734 1.02493 1.01229 0.91329 1.23142 0.96675 0.93613 0.94010 1.67426 1.11473 1.41264 1.01730 0.94178 0.91433 0.93662 0.94893 0.94259 0.94093 0.92709 0.96091 0.91834 0.91450 0.84295 0.81980 0.89625 0.90298 0.90259 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.21 71.98 0.73 -4.81 16 2 C 0.13 6.00 6.44 86.38 0.56 6.55 16 3 N -0.60 -31.62 2.43 -702.00 -1.71 -33.33 16 4 C -0.27 -14.90 9.45 84.03 0.79 -14.11 16 5 H 0.06 3.17 7.92 -2.91 -0.02 3.15 16 6 C -0.04 -2.19 4.95 84.86 0.42 -1.77 16 7 N -0.92 -55.71 11.47 21.65 0.25 -55.46 16 8 Si 0.96 45.11 29.60 68.60 2.03 47.14 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 C 0.17 8.71 5.19 86.38 0.45 9.16 16 13 C -0.07 -3.13 5.94 29.85 0.18 -2.95 16 14 C 0.11 4.45 6.17 42.55 0.26 4.71 16 15 C -0.18 -5.84 9.71 22.36 0.22 -5.62 16 16 C -0.08 -1.98 9.86 22.47 0.22 -1.76 16 17 C -0.15 -3.65 5.90 -19.77 -0.12 -3.77 16 18 C -0.10 -1.50 10.04 71.24 0.72 -0.78 16 19 C 0.08 2.45 10.86 84.67 0.92 3.37 16 20 N -0.51 -19.38 9.89 -183.89 -1.82 -21.20 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.04 1.65 6.64 -2.39 -0.02 1.63 16 24 H 0.03 1.50 8.08 -2.38 -0.02 1.48 16 25 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 26 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 27 H 0.05 3.21 5.52 -2.39 -0.01 3.20 16 28 H 0.02 1.08 7.67 -2.39 -0.02 1.06 16 29 H 0.06 2.77 7.87 -2.39 -0.02 2.75 16 30 H 0.07 2.79 6.64 -2.38 -0.02 2.77 16 31 H 0.14 4.11 7.95 -2.91 -0.02 4.09 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 35 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -67.59 300.61 5.14 -62.44 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 1.04 Total: 12.17 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.35 Total: -11.77 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.28 Total: -109.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.59 5.14 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399783360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.829 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds