Wall clock time and date at job start Mon Mar 30 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38676 * 120.42105 * 2 1 4 4 C 1.38625 * 118.41650 * 180.24368 * 3 2 1 5 5 C 1.38232 * 119.16526 * 359.75458 * 4 3 2 6 6 N 1.31849 * 120.76108 * 0.02562 * 5 4 3 7 7 C 1.31879 * 121.72870 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.61991 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46832 * 90.00385 * 8 7 6 10 10 N 1.46904 * 109.47049 * 180.02562 * 9 8 7 11 11 C 1.46906 * 110.99716 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.46825 * 35.00670 * 11 10 9 13 13 C 1.52997 * 109.47302 * 274.99847 * 11 10 9 14 14 C 1.50708 * 109.46619 * 155.00022 * 11 10 9 15 15 H 1.07995 * 119.99755 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99729 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99909 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46950 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47111 * 120.00368 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00161 * 18 16 14 22 22 H 1.09002 * 109.47084 * 270.25223 * 1 2 3 23 23 H 1.08998 * 109.47028 * 30.24851 * 1 2 3 24 24 H 1.08997 * 109.47319 * 150.24961 * 1 2 3 25 25 H 1.07999 * 120.79005 * 0.02562 * 3 2 1 26 26 H 1.08007 * 120.41684 * 179.72878 * 4 3 2 27 27 H 1.07997 * 119.61443 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47108 * 330.00857 * 8 7 6 29 29 H 1.08998 * 109.47838 * 210.00431 * 8 7 6 30 30 H 1.08996 * 109.47558 * 60.00304 * 9 8 7 31 31 H 1.09007 * 109.47342 * 300.00123 * 9 8 7 32 32 H 1.00900 * 110.99849 * 56.05147 * 10 9 8 33 33 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.46832 * 60.00356 * 13 11 10 35 35 H 1.09004 * 109.47261 * 300.00337 * 13 11 10 36 36 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0050 6 7 3.5254 -1.1997 -0.0004 7 6 2.2066 -1.1917 0.0046 8 6 1.4538 -2.4972 0.0090 9 6 1.2045 -2.9371 1.4531 10 7 0.4712 -4.2100 1.4575 11 6 0.2140 -4.6646 2.8306 12 1 0.0330 -3.8014 3.4711 13 6 1.4285 -5.4379 3.3478 14 6 -0.9963 -5.5625 2.8439 15 1 -1.5214 -5.7746 1.9244 16 6 -1.4324 -6.1140 4.0299 17 7 -0.7925 -5.8561 5.1496 18 14 -2.9330 -7.2265 4.0466 19 1 -3.4682 -7.3564 2.6675 20 1 -2.5494 -8.5674 4.5567 21 1 -3.9738 -6.6405 4.9289 22 1 -0.3633 0.0045 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3634 -0.8922 -0.5099 25 1 1.6891 2.1423 0.0004 26 1 4.1736 2.0591 -0.0098 27 1 5.3046 -0.1288 -0.0086 28 1 2.0415 -3.2572 -0.5060 29 1 0.4994 -2.3681 -0.5014 30 1 0.6169 -2.1772 1.9682 31 1 2.1590 -3.0662 1.9636 32 1 0.9659 -4.9141 0.9306 33 1 1.2375 -5.7756 4.3664 34 1 2.3039 -4.7884 3.3381 35 1 1.6095 -6.3011 2.7072 36 1 -1.0991 -6.2444 5.9839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405030827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:38 Heat of formation + Delta-G solvation = 21.371743 kcal Electronic energy + Delta-G solvation = -15957.930830 eV Core-core repulsion = 13441.403850 eV Total energy + Delta-G solvation = -2516.526980 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33387 -36.30838 -34.01132 -33.31292 -32.07361 -29.69558 -27.50779 -26.54312 -25.09259 -23.13164 -22.17960 -20.90481 -20.13579 -16.80467 -16.43796 -16.15994 -15.02303 -14.75383 -14.59717 -14.18950 -13.50647 -13.38141 -13.08101 -12.76885 -12.68760 -12.52519 -12.11521 -11.65893 -11.49776 -11.13981 -10.94874 -10.87029 -10.60259 -10.27455 -10.07830 -9.88547 -9.67626 -9.35136 -8.97540 -8.68029 -8.33071 -7.19408 -5.94805 -3.98035 1.11938 1.28538 3.34020 3.41572 3.47024 3.78805 4.34899 4.48051 4.71478 4.78037 4.93737 5.01598 5.33459 5.36796 5.47493 5.52784 5.61500 5.68272 5.72329 5.93384 6.04669 6.09412 6.14994 6.25793 6.49601 6.55406 6.75572 6.78756 6.90667 7.15772 7.41690 7.78676 7.92664 8.07197 8.31660 8.58350 8.66132 9.09693 9.67282 11.12341 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.004771 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.977615 B = 5867.435651 C = 6147.513156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.079 4.079 4 C -0.182 4.182 5 C 0.091 3.909 6 N -0.480 5.480 7 C 0.140 3.860 8 C -0.073 4.073 9 C 0.072 3.928 10 N -0.684 5.684 11 C 0.211 3.789 12 H 0.032 0.968 13 C -0.169 4.169 14 C -0.493 4.493 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.021 0.979 32 H 0.326 0.674 33 H 0.088 0.912 34 H 0.005 0.995 35 H 0.028 0.972 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.242 13.000 -9.856 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.202 4.202 5 C -0.066 4.066 6 N -0.188 5.188 7 C 0.002 3.998 8 C -0.112 4.112 9 C -0.059 4.059 10 N -0.313 5.313 11 C 0.103 3.897 12 H 0.050 0.950 13 C -0.228 4.228 14 C -0.532 4.532 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.212 1.212 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.041 12.457 -9.729 16.922 hybrid contribution -0.090 0.060 0.510 0.522 sum 5.951 12.517 -9.219 16.646 Atomic orbital electron populations 1.20851 0.89965 1.03180 1.03241 1.20798 0.97848 0.93482 1.01176 1.21459 0.94150 0.98003 0.96889 1.22065 0.95294 0.99463 1.03357 1.22705 1.00160 0.87787 0.95952 1.67537 1.07992 1.31393 1.11918 1.21266 0.89458 0.95183 0.93868 1.20666 0.99181 0.91960 0.99355 1.21739 0.96424 0.94429 0.93296 1.60834 1.48787 1.03701 1.18010 1.19173 0.93113 0.94484 0.82920 0.95005 1.22425 0.96770 0.98727 1.04910 1.21210 1.10788 1.27317 0.93855 0.91846 1.24963 0.97208 0.96871 0.95596 1.69904 1.40158 1.45290 0.98475 0.86456 0.82774 0.80236 0.78010 1.19715 1.21248 1.21185 0.90413 0.91745 0.90166 0.85109 0.85163 0.83091 0.90482 0.89187 0.91892 0.96073 0.85817 0.89320 0.97604 0.95307 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.62 36.00 0.35 -0.93 16 2 C -0.13 -1.68 5.90 -104.48 -0.62 -2.30 16 3 C -0.08 -0.87 9.86 -39.28 -0.39 -1.25 16 4 C -0.18 -1.90 10.11 -39.44 -0.40 -2.30 16 5 C 0.09 1.11 11.18 -17.55 -0.20 0.92 16 6 N -0.48 -7.34 10.27 -9.47 -0.10 -7.44 16 7 C 0.14 2.09 6.03 -82.59 -0.50 1.60 16 8 C -0.07 -1.13 5.37 -27.88 -0.15 -1.28 16 9 C 0.07 1.34 5.47 -3.82 -0.02 1.32 16 10 N -0.68 -14.74 6.23 -107.94 -0.67 -15.41 16 11 C 0.21 5.41 2.57 -68.86 -0.18 5.24 16 12 H 0.03 0.90 7.80 -51.93 -0.41 0.50 16 13 C -0.17 -4.21 8.94 37.16 0.33 -3.87 16 14 C -0.49 -13.79 8.84 -34.44 -0.30 -14.09 16 15 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -26.07 11.32 55.43 0.63 -25.44 16 18 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 25 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 27 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.29 5.93 -51.93 -0.31 0.98 16 30 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.02 0.42 7.43 -51.93 -0.39 0.04 16 32 H 0.33 6.69 8.47 -39.29 -0.33 6.35 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 35 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -30.43 297.85 -8.20 -38.63 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.36 Total: 4.11 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.16 Total: -15.55 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.14 Total: -48.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.43 -8.20 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405030827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.004 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds