Wall clock time and date at job start Mon Mar 30 2020 04:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38676 * 120.42105 * 2 1 4 4 C 1.38625 * 118.41650 * 180.24368 * 3 2 1 5 5 C 1.38232 * 119.16526 * 359.75458 * 4 3 2 6 6 N 1.31849 * 120.76108 * 0.02562 * 5 4 3 7 7 C 1.31879 * 121.72870 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.61991 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46832 * 90.00385 * 8 7 6 10 10 N 1.46904 * 109.47049 * 180.02562 * 9 8 7 11 11 C 1.46906 * 110.99716 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.46825 * 35.00670 * 11 10 9 13 13 C 1.52997 * 109.47302 * 274.99847 * 11 10 9 14 14 C 1.50708 * 109.46619 * 155.00022 * 11 10 9 15 15 H 1.07995 * 119.99755 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99729 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99909 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99980 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46950 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47111 * 120.00368 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00161 * 18 16 14 22 22 H 1.09002 * 109.47084 * 270.25223 * 1 2 3 23 23 H 1.08998 * 109.47028 * 30.24851 * 1 2 3 24 24 H 1.08997 * 109.47319 * 150.24961 * 1 2 3 25 25 H 1.07999 * 120.79005 * 0.02562 * 3 2 1 26 26 H 1.08007 * 120.41684 * 179.72878 * 4 3 2 27 27 H 1.07997 * 119.61443 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47108 * 330.00857 * 8 7 6 29 29 H 1.08998 * 109.47838 * 210.00431 * 8 7 6 30 30 H 1.08996 * 109.47558 * 60.00304 * 9 8 7 31 31 H 1.09007 * 109.47342 * 300.00123 * 9 8 7 32 32 H 1.00900 * 110.99849 * 56.05147 * 10 9 8 33 33 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.46832 * 60.00356 * 13 11 10 35 35 H 1.09004 * 109.47261 * 300.00337 * 13 11 10 36 36 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0050 6 7 3.5254 -1.1997 -0.0004 7 6 2.2066 -1.1917 0.0046 8 6 1.4538 -2.4972 0.0090 9 6 1.2045 -2.9371 1.4531 10 7 0.4712 -4.2100 1.4575 11 6 0.2140 -4.6646 2.8306 12 1 0.0330 -3.8014 3.4711 13 6 1.4285 -5.4379 3.3478 14 6 -0.9963 -5.5625 2.8439 15 1 -1.5214 -5.7746 1.9244 16 6 -1.4324 -6.1140 4.0299 17 7 -0.7925 -5.8561 5.1496 18 14 -2.9330 -7.2265 4.0466 19 1 -3.4682 -7.3564 2.6675 20 1 -2.5494 -8.5674 4.5567 21 1 -3.9738 -6.6405 4.9289 22 1 -0.3633 0.0045 1.0277 23 1 -0.3633 0.8877 -0.5177 24 1 -0.3634 -0.8922 -0.5099 25 1 1.6891 2.1423 0.0004 26 1 4.1736 2.0591 -0.0098 27 1 5.3046 -0.1288 -0.0086 28 1 2.0415 -3.2572 -0.5060 29 1 0.4994 -2.3681 -0.5014 30 1 0.6169 -2.1772 1.9682 31 1 2.1590 -3.0662 1.9636 32 1 0.9659 -4.9141 0.9306 33 1 1.2375 -5.7756 4.3664 34 1 2.3039 -4.7884 3.3381 35 1 1.6095 -6.3011 2.7072 36 1 -1.0991 -6.2444 5.9839 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405030827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:38 Heat of formation + Delta-G solvation = 1.916094 kcal Electronic energy + Delta-G solvation = -15958.774490 eV Core-core repulsion = 13441.403850 eV Total energy + Delta-G solvation = -2517.370640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29155 -38.06782 -35.42976 -34.45423 -33.68302 -31.23419 -28.79337 -27.76194 -27.23358 -24.42100 -23.19815 -22.17950 -22.03102 -18.37080 -17.78161 -17.32197 -16.69111 -16.33212 -15.79352 -15.42237 -15.09950 -14.94135 -14.13786 -14.05628 -13.78253 -13.65787 -13.48029 -13.44748 -13.02559 -12.86442 -12.69892 -12.37347 -12.24622 -12.19228 -11.87790 -11.71939 -11.05302 -10.61183 -10.49035 -10.32383 -9.67400 -9.01826 -8.08938 -6.20602 0.18311 0.38683 1.44007 1.45338 1.58350 2.45384 2.82552 3.19513 3.32368 3.66386 3.96819 3.99095 4.05139 4.16460 4.25522 4.39098 4.53765 4.63931 4.71511 4.79441 4.82809 4.84808 4.88331 4.97587 5.04806 5.11362 5.27236 5.31650 5.40102 5.43124 5.68188 5.80348 5.87235 6.25599 6.61672 6.79927 6.94292 7.11053 7.49570 8.97303 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.004771 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.977615 B = 5867.435651 C = 6147.513156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.140 4.140 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.075 3.925 6 N -0.515 5.515 7 C 0.110 3.890 8 C -0.060 4.060 9 C 0.082 3.918 10 N -0.682 5.682 11 C 0.215 3.785 12 H -0.001 1.001 13 C -0.156 4.156 14 C -0.513 4.513 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.163 0.837 26 H 0.168 0.832 27 H 0.175 0.825 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.005 0.995 32 H 0.333 0.667 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.034 0.966 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 14.289 -10.863 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.142 4.142 3 C -0.107 4.107 4 C -0.189 4.189 5 C -0.082 4.082 6 N -0.224 5.224 7 C -0.027 4.027 8 C -0.098 4.098 9 C -0.048 4.048 10 N -0.311 5.311 11 C 0.106 3.894 12 H 0.017 0.983 13 C -0.216 4.216 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.181 0.819 26 H 0.185 0.815 27 H 0.192 0.808 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.950 13.750 -10.754 18.442 hybrid contribution 0.025 -0.233 0.816 0.849 sum 5.975 13.516 -9.938 17.809 Atomic orbital electron populations 1.20859 0.89126 1.04140 1.02938 1.21012 0.98633 0.93604 1.00960 1.21896 0.94628 0.98511 0.95631 1.22486 0.95461 1.00144 1.00837 1.23218 1.01340 0.87864 0.95805 1.67450 1.08427 1.33402 1.13108 1.21153 0.89772 0.95351 0.96473 1.20455 0.99903 0.92784 0.96660 1.21653 0.94804 0.92725 0.95647 1.60714 1.49839 1.04849 1.15736 1.18952 0.93002 0.92993 0.84438 0.98290 1.22244 0.97018 0.98995 1.03314 1.21479 1.11750 1.28018 0.93891 0.92325 1.25770 1.00033 0.98180 0.95158 1.70034 1.41516 1.46062 0.98991 0.85408 0.79133 0.78261 0.78207 1.19047 1.20681 1.20723 0.91262 0.89135 0.90884 0.81939 0.81477 0.80819 0.90861 0.88260 0.92817 0.97711 0.85036 0.91853 0.96333 0.94684 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 9.62 71.24 0.69 -1.69 16 2 C -0.14 -3.40 5.90 -19.77 -0.12 -3.52 16 3 C -0.08 -1.53 9.86 22.47 0.22 -1.31 16 4 C -0.17 -3.01 10.11 22.36 0.23 -2.78 16 5 C 0.07 1.69 11.18 84.69 0.95 2.64 16 6 N -0.51 -15.54 10.27 -183.89 -1.89 -17.42 16 7 C 0.11 3.25 6.03 42.54 0.26 3.50 16 8 C -0.06 -1.87 5.37 29.85 0.16 -1.71 16 9 C 0.08 3.14 5.47 86.30 0.47 3.61 16 10 N -0.68 -29.86 6.23 -495.41 -3.09 -32.95 16 11 C 0.21 11.30 2.57 44.17 0.11 11.41 16 12 H 0.00 -0.05 7.80 -2.39 -0.02 -0.07 16 13 C -0.16 -7.92 8.94 71.98 0.64 -7.27 16 14 C -0.51 -29.00 8.84 25.60 0.23 -28.77 16 15 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 16 C 0.01 0.36 5.30 84.65 0.45 0.81 16 17 N -0.93 -54.41 11.32 21.45 0.24 -54.17 16 18 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 24 H 0.07 1.61 5.95 -2.39 -0.01 1.60 16 25 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 27 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.10 2.85 5.93 -2.39 -0.01 2.83 16 30 H 0.05 2.13 8.06 -2.39 -0.02 2.11 16 31 H 0.00 0.19 7.43 -2.38 -0.02 0.18 16 32 H 0.33 13.76 8.47 -89.69 -0.76 13.00 16 33 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 34 H 0.02 0.84 7.45 -2.39 -0.02 0.82 16 35 H 0.03 1.67 8.13 -2.38 -0.02 1.65 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -65.87 297.85 1.88 -63.99 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.30 Total: 19.25 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.28 Total: -25.09 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.73 Total: -104.54 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.87 1.88 -63.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405030827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.908 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds