Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47541 * 270.00532 * 3 2 1 5 5 H 1.48501 * 109.47404 * 30.00837 * 3 2 1 6 6 H 1.48510 * 109.47312 * 150.00470 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00342 * 179.97438 * 10 9 7 12 12 C 1.53935 * 113.73225 * 154.99516 * 11 10 9 13 13 N 1.47962 * 86.30001 * 138.02731 * 12 11 10 14 14 C 1.38532 * 111.00217 * 222.47383 * 13 12 11 15 15 C 1.39668 * 120.53677 * 180.02562 * 14 13 12 16 16 C 1.38065 * 118.33927 * 180.02562 * 15 14 13 17 17 N 1.32583 * 119.19889 * 359.97438 * 16 15 14 18 18 C 1.31757 * 121.01315 * 0.02562 * 17 16 15 19 19 N 1.31781 * 121.83368 * 359.70632 * 18 17 16 20 20 C 1.48187 * 90.67343 * 335.41160 * 13 12 11 21 21 H 0.96998 * 120.00004 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47618 * 60.00157 * 9 7 2 23 23 H 1.09009 * 109.46992 * 300.00208 * 9 7 2 24 24 H 1.00896 * 110.99453 * 56.04249 * 10 9 7 25 25 H 1.09003 * 113.00832 * 23.36937 * 11 10 9 26 26 H 1.09002 * 113.76229 * 252.40128 * 12 11 10 27 27 H 1.09005 * 113.75703 * 23.65653 * 12 11 10 28 28 H 1.08009 * 120.82860 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.40160 * 180.02562 * 16 15 14 30 30 H 1.08001 * 119.08555 * 180.02562 * 18 17 16 31 31 H 1.09005 * 113.65869 * 270.26633 * 20 13 12 32 32 H 1.09002 * 113.92722 * 138.95266 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9071 0.0001 12 6 2.3324 -6.0607 -0.5955 13 7 1.8173 -6.8803 0.5235 14 6 2.8202 -7.6681 1.0646 15 6 2.5509 -8.5232 2.1355 16 6 3.5842 -9.2875 2.6398 17 7 4.7889 -9.1865 2.0953 18 6 5.0110 -8.3701 1.0853 19 7 4.0535 -7.6262 0.5692 20 6 1.5987 -5.6620 1.3383 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8902 23 1 0.6246 -2.5570 0.8897 24 1 2.8404 -3.5487 0.7808 25 1 0.4924 -4.8427 -0.3976 26 1 1.9864 -6.3887 -1.5757 27 1 3.4089 -5.8939 -0.5585 28 1 1.5592 -8.5844 2.5592 29 1 3.4131 -9.9602 3.4672 30 1 6.0044 -8.3127 0.6653 31 1 2.4607 -5.3794 1.9426 32 1 0.6671 -5.6698 1.9041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601966422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = 98.444703 kcal Electronic energy + Delta-G solvation = -15645.525166 eV Core-core repulsion = 13028.799977 eV Total energy + Delta-G solvation = -2616.725189 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.50955 -39.44600 -34.85231 -33.36424 -32.51583 -31.56933 -27.93776 -26.27738 -25.71369 -24.19574 -22.78805 -21.58847 -19.74374 -17.79377 -17.55535 -16.35054 -15.80276 -15.53996 -15.07533 -15.03862 -14.46995 -14.08943 -13.81257 -13.21486 -12.70338 -12.51849 -12.21235 -11.57114 -11.24561 -11.11539 -10.86909 -10.70714 -10.67148 -10.49398 -10.06685 -9.95336 -9.39504 -9.24606 -8.85580 -8.52938 -7.42604 -6.07820 -4.10237 0.80701 0.92453 3.30104 3.36037 3.39377 3.44661 3.71015 4.04211 4.07492 4.39568 4.60310 4.79996 4.89726 4.97791 5.25554 5.28073 5.33604 5.36725 5.58693 5.63190 5.75056 5.92625 6.03133 6.23106 6.38416 6.90391 7.04012 7.14802 7.33055 7.71923 7.98493 8.05245 8.26141 8.49649 8.98428 9.55069 11.03149 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.050457 B = 0.004529 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.791213 B = 6180.911201 C = 6393.847979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.673 5.673 11 C 0.070 3.930 12 C 0.020 3.980 13 N -0.441 5.441 14 C 0.331 3.669 15 C -0.227 4.227 16 C 0.153 3.847 17 N -0.541 5.541 18 C 0.313 3.687 19 N -0.547 5.547 20 C -0.007 4.007 21 H 0.262 0.738 22 H 0.031 0.969 23 H -0.011 1.011 24 H 0.332 0.668 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.195 0.805 31 H 0.075 0.925 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -16.004 4.466 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.303 5.303 11 C -0.043 4.043 12 C -0.108 4.108 13 N -0.161 5.161 14 C 0.091 3.909 15 C -0.251 4.251 16 C -0.010 4.010 17 N -0.257 5.257 18 C 0.024 3.976 19 N -0.266 5.266 20 C -0.135 4.135 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.007 0.993 24 H 0.150 0.850 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.165 0.835 29 H 0.184 0.816 30 H 0.212 0.788 31 H 0.093 0.907 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.958 -16.228 3.282 17.283 hybrid contribution -0.207 1.092 1.401 1.789 sum 4.751 -15.136 4.683 16.541 Atomic orbital electron populations 1.69954 1.06087 1.26895 1.50694 1.24978 0.94876 0.99394 0.95206 0.86475 0.79667 0.82927 0.78197 1.20545 1.21282 1.19856 1.21174 0.93542 0.90228 1.50672 0.91946 1.19640 0.90533 0.87188 0.96011 1.60568 1.20502 1.00732 1.48450 1.23427 0.98517 0.90300 0.92070 1.24249 1.01758 0.90402 0.94400 1.65888 1.28948 1.13335 1.07890 1.20930 0.88487 0.92312 0.89172 1.22463 1.02579 1.00204 0.99890 1.23059 0.87527 0.94175 0.96263 1.68427 1.23713 1.21507 1.12062 1.24844 0.98324 0.86217 0.88264 1.68482 1.00585 1.24762 1.32735 1.24919 1.02471 0.87349 0.98779 0.92840 0.95110 0.99300 0.84971 0.87798 0.89238 0.87684 0.83488 0.81566 0.78816 0.90684 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.38 9.32 -34.44 -0.32 -14.70 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 4.87 5.28 -4.98 -0.03 4.84 16 10 N -0.67 -13.82 6.62 -108.98 -0.72 -14.54 16 11 C 0.07 1.18 4.37 -69.11 -0.30 0.88 16 12 C 0.02 0.31 7.46 -2.77 -0.02 0.29 16 13 N -0.44 -6.33 6.27 -175.70 -1.10 -7.43 16 14 C 0.33 4.56 5.90 -154.79 -0.91 3.64 16 15 C -0.23 -2.55 10.05 -39.11 -0.39 -2.95 16 16 C 0.15 1.56 11.29 -17.29 -0.20 1.37 16 17 N -0.54 -6.42 10.43 -14.67 -0.15 -6.57 16 18 C 0.31 3.74 12.28 -92.20 -1.13 2.61 16 19 N -0.55 -7.64 8.37 -13.81 -0.12 -7.75 16 20 C -0.01 -0.10 7.52 -2.65 -0.02 -0.12 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 23 H -0.01 -0.29 8.14 -51.92 -0.42 -0.71 16 24 H 0.33 6.58 8.18 -39.29 -0.32 6.25 16 25 H 0.10 1.81 7.87 -51.93 -0.41 1.40 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.11 1.71 6.70 -51.93 -0.35 1.36 16 28 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.07 1.10 7.58 -51.93 -0.39 0.70 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 277.95 15.07 4.19 4.19 Total: -1.00 -30.62 277.95 -9.58 -40.21 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.98 Total: 3.75 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.42 Total: -2.63 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -1.35 Total: -61.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.62 -9.58 -40.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601966422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.650 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds