Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47541 * 270.00532 * 3 2 1 5 5 H 1.48501 * 109.47404 * 30.00837 * 3 2 1 6 6 H 1.48510 * 109.47312 * 150.00470 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99931 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00342 * 179.97438 * 10 9 7 12 12 C 1.53935 * 113.73225 * 154.99516 * 11 10 9 13 13 N 1.47962 * 86.30001 * 138.02731 * 12 11 10 14 14 C 1.38532 * 111.00217 * 222.47383 * 13 12 11 15 15 C 1.39668 * 120.53677 * 180.02562 * 14 13 12 16 16 C 1.38065 * 118.33927 * 180.02562 * 15 14 13 17 17 N 1.32583 * 119.19889 * 359.97438 * 16 15 14 18 18 C 1.31757 * 121.01315 * 0.02562 * 17 16 15 19 19 N 1.31781 * 121.83368 * 359.70632 * 18 17 16 20 20 C 1.48187 * 90.67343 * 335.41160 * 13 12 11 21 21 H 0.96998 * 120.00004 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47618 * 60.00157 * 9 7 2 23 23 H 1.09009 * 109.46992 * 300.00208 * 9 7 2 24 24 H 1.00896 * 110.99453 * 56.04249 * 10 9 7 25 25 H 1.09003 * 113.00832 * 23.36937 * 11 10 9 26 26 H 1.09002 * 113.76229 * 252.40128 * 12 11 10 27 27 H 1.09005 * 113.75703 * 23.65653 * 12 11 10 28 28 H 1.08009 * 120.82860 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.40160 * 180.02562 * 16 15 14 30 30 H 1.08001 * 119.08555 * 180.02562 * 18 17 16 31 31 H 1.09005 * 113.65869 * 270.26633 * 20 13 12 32 32 H 1.09002 * 113.92722 * 138.95266 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9071 0.0001 12 6 2.3324 -6.0607 -0.5955 13 7 1.8173 -6.8803 0.5235 14 6 2.8202 -7.6681 1.0646 15 6 2.5509 -8.5232 2.1355 16 6 3.5842 -9.2875 2.6398 17 7 4.7889 -9.1865 2.0953 18 6 5.0110 -8.3701 1.0853 19 7 4.0535 -7.6262 0.5692 20 6 1.5987 -5.6620 1.3383 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8902 23 1 0.6246 -2.5570 0.8897 24 1 2.8404 -3.5487 0.7808 25 1 0.4924 -4.8427 -0.3976 26 1 1.9864 -6.3887 -1.5757 27 1 3.4089 -5.8939 -0.5585 28 1 1.5592 -8.5844 2.5592 29 1 3.4131 -9.9602 3.4672 30 1 6.0044 -8.3127 0.6653 31 1 2.4607 -5.3794 1.9426 32 1 0.6671 -5.6698 1.9041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601966422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = 76.486282 kcal Electronic energy + Delta-G solvation = -15646.477355 eV Core-core repulsion = 13028.799977 eV Total energy + Delta-G solvation = -2617.677377 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.52292 -40.56111 -36.49296 -34.72424 -33.94331 -32.85082 -29.46293 -27.50022 -27.34509 -25.11793 -24.17349 -23.25418 -21.09206 -18.91569 -18.52981 -18.31271 -17.11581 -16.59179 -16.39641 -16.20193 -16.01666 -15.27670 -14.91881 -14.46378 -14.37313 -14.22993 -13.53970 -13.45610 -12.88579 -12.67235 -12.29640 -12.23566 -11.97357 -11.90792 -11.60956 -11.25164 -11.00363 -10.66365 -10.32552 -9.94359 -9.13228 -8.22273 -6.33192 -0.11940 0.05159 1.42464 1.43838 1.54741 2.37779 2.43356 2.77478 3.05819 3.11558 3.29019 3.41292 3.58389 3.76313 3.99343 4.17925 4.19445 4.32608 4.41617 4.61950 4.64777 4.74467 4.86693 4.93879 5.11443 5.27822 5.36809 5.61938 5.90278 6.01440 6.02812 6.41013 6.65803 6.86855 7.08513 7.37707 8.88979 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.050457 B = 0.004529 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.791213 B = 6180.911201 C = 6393.847979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.673 5.673 11 C 0.059 3.941 12 C 0.030 3.970 13 N -0.437 5.437 14 C 0.303 3.697 15 C -0.224 4.224 16 C 0.159 3.841 17 N -0.550 5.550 18 C 0.305 3.695 19 N -0.570 5.570 20 C 0.006 3.994 21 H 0.265 0.735 22 H 0.003 0.997 23 H -0.031 1.031 24 H 0.337 0.663 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.167 0.833 29 H 0.206 0.794 30 H 0.218 0.782 31 H 0.075 0.925 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -16.808 5.458 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.303 5.303 11 C -0.053 4.053 12 C -0.098 4.098 13 N -0.156 5.156 14 C 0.064 3.936 15 C -0.248 4.248 16 C -0.005 4.005 17 N -0.266 5.266 18 C 0.016 3.984 19 N -0.289 5.289 20 C -0.122 4.122 21 H 0.074 0.926 22 H 0.021 0.979 23 H -0.013 1.013 24 H 0.155 0.845 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.185 0.815 29 H 0.223 0.777 30 H 0.234 0.766 31 H 0.093 0.907 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.942 -17.067 4.275 18.570 hybrid contribution -0.490 1.220 1.120 1.728 sum 5.453 -15.846 5.395 17.605 Atomic orbital electron populations 1.70073 1.07702 1.28017 1.51409 1.25894 0.95749 1.03212 0.94558 0.85367 0.78538 0.78183 0.78411 1.19977 1.20672 1.18851 1.21547 0.93788 0.91551 1.50761 0.91906 1.19257 0.90534 0.88419 0.93657 1.60429 1.19916 1.01019 1.48945 1.23477 0.98157 0.89062 0.94602 1.24067 1.00911 0.89717 0.95145 1.65905 1.29506 1.12946 1.07267 1.21099 0.88500 0.93333 0.90632 1.22712 1.03893 0.99324 0.98857 1.23714 0.86533 0.93783 0.96464 1.68516 1.24602 1.21405 1.12058 1.25341 0.98890 0.85850 0.88323 1.68445 1.01115 1.25791 1.33552 1.24746 1.03116 0.86937 0.97407 0.92583 0.97863 1.01306 0.84488 0.88704 0.88809 0.88470 0.81517 0.77729 0.76552 0.90719 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.27 9.32 25.60 0.24 -30.03 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.21 10.89 5.28 85.56 0.45 11.34 16 10 N -0.67 -28.14 6.62 -498.70 -3.30 -31.44 16 11 C 0.06 2.02 4.37 46.37 0.20 2.22 16 12 C 0.03 0.92 7.46 86.41 0.64 1.57 16 13 N -0.44 -12.13 6.27 -709.80 -4.45 -16.58 16 14 C 0.30 7.93 5.90 133.18 0.79 8.71 16 15 C -0.22 -4.48 10.05 22.57 0.23 -4.25 16 16 C 0.16 2.75 11.29 84.54 0.95 3.70 16 17 N -0.55 -11.74 10.43 -200.33 -2.09 -13.83 16 18 C 0.30 6.80 12.28 180.90 2.22 9.02 16 19 N -0.57 -15.30 8.37 -197.60 -1.65 -16.96 16 20 C 0.01 0.17 7.52 86.36 0.65 0.82 16 21 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 22 H 0.00 0.19 8.13 -2.39 -0.02 0.17 16 23 H -0.03 -1.70 8.14 -2.38 -0.02 -1.71 16 24 H 0.34 13.45 8.18 -89.70 -0.73 12.71 16 25 H 0.09 3.41 7.87 -2.39 -0.02 3.39 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.10 3.16 6.70 -2.38 -0.02 3.14 16 28 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.22 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.07 2.12 7.58 -2.38 -0.02 2.10 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -65.58 277.95 -1.95 -67.53 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.39 Total: 16.81 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.84 Total: 3.81 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -11.21 Total: -133.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.58 -1.95 -67.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601966422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.019 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds