Wall clock time and date at job start Mon Mar 30 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38670 * 120.41893 * 2 1 4 4 C 1.38634 * 118.41628 * 180.02562 * 3 2 1 5 5 C 1.38227 * 119.16254 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.61624 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46999 * 125.00118 * 6 5 4 8 8 N 1.46906 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.47453 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00058 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00172 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99709 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47101 * 60.00163 * 15 13 11 17 17 H 1.48504 * 109.46703 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47283 * 299.99821 * 15 13 11 19 19 N 1.31852 * 120.75987 * 0.25351 * 5 4 3 20 20 C 1.31884 * 121.73037 * 359.47984 * 19 5 4 21 21 H 1.09002 * 109.47239 * 89.99582 * 1 2 3 22 22 H 1.08995 * 109.47224 * 210.00126 * 1 2 3 23 23 H 1.09000 * 109.46752 * 329.99619 * 1 2 3 24 24 H 1.07993 * 120.79009 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.41367 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47328 * 5.00043 * 6 5 4 27 27 H 1.09004 * 109.47043 * 244.99853 * 6 5 4 28 28 H 1.08992 * 109.47056 * 59.99641 * 7 6 5 29 29 H 1.09004 * 109.47006 * 299.99757 * 7 6 5 30 30 H 1.00899 * 110.99484 * 303.95475 * 8 7 6 31 31 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 32 32 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 33 33 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 34 34 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 35 35 H 0.96998 * 119.99843 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.61705 * 180.26512 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1474 -0.0005 5 6 4.2256 -0.0825 -0.0016 6 6 5.7312 -0.1471 -0.0028 7 6 6.2062 -0.9962 1.1781 8 7 7.6738 -1.0596 1.1766 9 6 8.1669 -1.8681 2.2995 10 6 9.6959 -1.9114 2.2642 11 6 10.2018 -2.7413 3.4158 12 1 9.5027 -3.1932 4.1039 13 6 11.5572 -2.9238 3.5910 14 7 12.4085 -2.3732 2.7535 15 14 12.1841 -3.9520 5.0190 16 1 11.6476 -5.3323 4.9083 17 1 13.6682 -3.9940 4.9846 18 1 11.7351 -3.3476 6.2989 19 7 3.5254 -1.1997 -0.0071 20 6 2.2066 -1.1917 -0.0016 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6890 2.1422 -0.0004 25 1 4.1736 2.0591 -0.0001 26 1 6.1382 0.8601 0.0869 27 1 6.0749 -0.5962 -0.9347 28 1 5.7992 -2.0032 1.0884 29 1 5.8625 -0.5471 2.1100 30 1 8.0195 -1.4129 0.2969 31 1 7.8373 -1.4245 3.2390 32 1 7.7732 -2.8813 2.2183 33 1 10.0253 -2.3552 1.3246 34 1 10.0900 -0.8983 2.3452 35 1 13.3620 -2.5019 2.8765 36 1 1.6671 -2.1273 -0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689400089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:17 Heat of formation + Delta-G solvation = 10.369506 kcal Electronic energy + Delta-G solvation = -15160.565235 eV Core-core repulsion = 12643.561162 eV Total energy + Delta-G solvation = -2517.004073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44279 -36.37076 -34.30909 -32.99613 -32.33273 -30.77168 -28.59303 -26.21030 -24.23398 -23.58379 -22.15007 -21.12519 -20.36009 -16.88806 -16.36541 -16.16308 -15.29646 -15.19987 -14.76962 -14.41550 -13.97427 -13.70982 -13.38914 -12.96685 -12.80905 -12.75024 -12.61539 -12.04153 -11.61146 -11.43748 -11.24608 -10.87234 -10.85460 -10.51415 -9.94779 -9.91156 -9.53099 -9.31414 -9.12054 -8.84832 -8.30998 -7.74399 -5.95758 -3.98110 0.94105 1.13298 3.36555 3.40402 3.43197 3.61473 4.18093 4.43859 4.52078 4.58119 4.71238 4.78977 5.07284 5.17164 5.23952 5.34468 5.39612 5.40064 5.49678 5.58019 5.70836 5.86781 5.94537 6.05910 6.22152 6.27222 6.40982 6.51347 6.59844 7.04032 7.53443 7.78225 7.87927 7.90743 8.02658 8.13724 8.48624 9.09034 9.65301 11.15763 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.063330 B = 0.003303 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.020917 B = 8475.453893 C = 8722.115232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.152 4.152 3 C -0.076 4.076 4 C -0.165 4.165 5 C 0.134 3.866 6 C -0.069 4.069 7 C 0.068 3.932 8 N -0.694 5.694 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.477 5.477 20 C 0.102 3.898 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.336 0.664 31 H 0.057 0.943 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.426 6.695 -7.255 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.185 4.185 5 C -0.004 4.004 6 C -0.107 4.107 7 C -0.062 4.062 8 N -0.325 5.325 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.186 5.186 20 C -0.056 4.056 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.150 0.850 25 H 0.154 0.846 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.703 6.509 -6.951 23.700 hybrid contribution -0.314 -0.623 0.488 0.851 sum -22.016 5.887 -6.463 23.688 Atomic orbital electron populations 1.20691 0.90371 1.03018 1.02406 1.20913 0.97494 0.94382 1.02599 1.21468 0.94052 0.98075 0.96637 1.22037 0.95071 0.99180 1.02227 1.21350 0.96839 0.88286 0.93959 1.20568 0.87546 1.02494 1.00100 1.21776 0.89315 0.98053 0.97055 1.60596 1.06800 1.57728 1.07357 1.22142 0.99312 0.92788 0.91934 1.19068 0.87677 0.97619 0.96840 1.21160 0.91708 1.31450 1.11755 0.92817 1.25002 0.97012 0.95971 0.96392 1.69961 1.02169 1.44406 1.36798 0.86644 0.77579 0.80778 0.82901 1.20291 1.21274 1.20229 1.67512 1.08012 1.31246 1.11786 1.22667 0.89831 0.97419 0.95688 0.91089 0.91239 0.91478 0.85024 0.84618 0.89462 0.90097 0.94673 0.91836 0.84713 0.92465 0.96622 0.96786 0.95655 0.92955 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 36.01 0.36 -0.28 16 2 C -0.15 -1.39 5.90 -104.48 -0.62 -2.00 16 3 C -0.08 -0.69 9.86 -39.28 -0.39 -1.08 16 4 C -0.17 -1.73 9.71 -39.44 -0.38 -2.11 16 5 C 0.13 1.70 6.17 -82.59 -0.51 1.19 16 6 C -0.07 -0.90 5.87 -27.88 -0.16 -1.06 16 7 C 0.07 1.09 5.55 -3.82 -0.02 1.07 16 8 N -0.69 -13.04 6.50 -113.78 -0.74 -13.78 16 9 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 10 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 15 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.48 -6.47 9.89 -9.48 -0.09 -6.57 16 20 C 0.10 1.11 10.86 -17.55 -0.19 0.91 16 21 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 23 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 24 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 25 H 0.14 1.15 7.95 -52.49 -0.42 0.73 16 26 H 0.09 1.05 7.87 -51.93 -0.41 0.64 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.59 7.95 -51.93 -0.41 0.18 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.34 6.03 8.73 -39.29 -0.34 5.68 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -32.27 307.78 -8.74 -41.01 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.77 Total: -0.33 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.49 Total: -15.34 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.10 Total: -47.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.27 -8.74 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689400089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.379 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds