Wall clock time and date at job start Mon Mar 30 2020 03:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.46906 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.47076 * 29.99561 * 3 2 1 6 6 H 1.48492 * 109.47172 * 149.99708 * 3 2 1 7 7 C 1.37874 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47011 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46687 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99586 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46894 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46835 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.38232 * 119.61338 * 125.00016 * 15 14 13 17 17 C 1.38624 * 119.15705 * 179.97438 * 16 15 14 18 18 C 1.38675 * 118.42145 * 0.02562 * 17 16 15 19 19 C 1.38178 * 119.16507 * 359.97438 * 18 17 16 20 20 N 1.31847 * 119.62208 * 304.72894 * 15 14 13 21 21 H 0.96996 * 120.00702 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47042 * 60.00187 * 9 7 2 23 23 H 1.08999 * 109.46983 * 300.00413 * 9 7 2 24 24 H 1.08996 * 109.47196 * 60.00121 * 10 9 7 25 25 H 1.08999 * 109.47453 * 299.99965 * 10 9 7 26 26 H 1.00897 * 111.00336 * 56.04810 * 11 10 9 27 27 H 1.09003 * 109.46685 * 60.00580 * 12 11 10 28 28 H 1.08990 * 109.47234 * 300.00017 * 12 11 10 29 29 H 1.08999 * 109.46987 * 60.00305 * 13 12 11 30 30 H 1.09000 * 109.47102 * 300.00131 * 13 12 11 31 31 H 1.08999 * 109.47230 * 60.00274 * 14 13 12 32 32 H 1.09000 * 109.47236 * 299.99870 * 14 13 12 33 33 H 1.07995 * 120.42020 * 359.95593 * 16 15 14 34 34 H 1.08003 * 120.79128 * 180.02562 * 17 16 15 35 35 H 1.08003 * 120.41790 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.61563 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 2.4356 -6.0758 0.0036 13 6 1.6356 -7.3800 0.0048 14 6 2.5986 -8.5689 0.0059 15 6 1.8105 -9.8535 0.0064 16 6 2.0412 -10.7968 -0.9774 17 6 1.3114 -11.9753 -0.9675 18 6 0.3721 -12.1616 0.0356 19 6 0.1965 -11.1737 0.9856 20 7 0.9129 -10.0670 0.9482 21 1 -0.4851 0.8399 -0.0004 22 1 0.6242 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.8721 -3.6034 0.8926 25 1 2.8722 -3.6050 -0.8873 26 1 0.8749 -4.9848 -0.7783 27 1 3.0636 -6.0344 0.8937 28 1 3.0635 -6.0351 -0.8863 29 1 1.0073 -7.4216 -0.8849 30 1 1.0079 -7.4204 0.8951 31 1 3.2265 -8.5271 0.8958 32 1 3.2265 -8.5287 -0.8841 33 1 2.7805 -10.6178 -1.7440 34 1 1.4704 -12.7305 -1.7231 35 1 -0.2141 -13.0679 0.0743 36 1 -0.5326 -11.3114 1.7703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693688363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:41 Heat of formation + Delta-G solvation = 10.991264 kcal Electronic energy + Delta-G solvation = -15036.007362 eV Core-core repulsion = 12519.030251 eV Total energy + Delta-G solvation = -2516.977111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38440 -36.55653 -34.31452 -32.82953 -32.52088 -30.84743 -28.73997 -25.79054 -23.85645 -23.55418 -21.95710 -21.11446 -20.24374 -17.07411 -16.47372 -16.25919 -15.70978 -15.49386 -14.71972 -14.38280 -14.07543 -13.70879 -13.49474 -13.41257 -12.83810 -12.24090 -12.16129 -11.97059 -11.57981 -11.08694 -11.06725 -10.87316 -10.61531 -10.48764 -10.08960 -9.91543 -9.57269 -9.33323 -9.15882 -9.07272 -8.31720 -7.73733 -5.96119 -3.98668 0.89364 1.06388 3.34383 3.40376 3.44047 3.58814 4.11246 4.40226 4.49035 4.61258 4.80357 4.85985 4.94565 5.12812 5.22268 5.39551 5.42463 5.45791 5.64190 5.70993 5.78265 5.91131 5.93679 5.94930 6.32500 6.38834 6.44173 6.48524 6.57401 7.03506 7.55520 7.78090 7.83786 7.88594 8.02882 8.13926 8.47964 9.08791 9.64856 11.15405 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.074828 B = 0.003045 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.103940 B = 9193.096728 C = 9379.747286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.693 5.693 12 C 0.059 3.941 13 C -0.107 4.107 14 C -0.070 4.070 15 C 0.138 3.862 16 C -0.174 4.174 17 C -0.075 4.075 18 C -0.185 4.185 19 C 0.103 3.897 20 N -0.478 5.478 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.014 0.986 26 H 0.335 0.665 27 H 0.067 0.933 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -24.381 -2.056 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.071 4.071 13 C -0.146 4.146 14 C -0.108 4.108 15 C 0.000 4.000 16 C -0.194 4.194 17 C -0.101 4.101 18 C -0.205 4.205 19 C -0.054 4.054 20 N -0.187 5.187 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.152 0.848 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.899 -23.621 -0.721 23.810 hybrid contribution 0.847 0.192 -1.647 1.862 sum 3.746 -23.430 -2.369 23.845 Atomic orbital electron populations 1.69974 1.06035 1.26563 1.50727 1.25011 0.94846 0.99217 0.95352 0.86582 0.79842 0.83471 0.78027 1.20726 1.21189 1.19884 1.21193 0.92987 0.91060 1.50764 0.92765 1.19075 0.94056 0.90457 0.97719 1.22151 0.96949 0.88579 0.98551 1.60568 1.19898 1.02173 1.49685 1.21937 0.94707 0.90543 0.99914 1.21476 0.97807 0.91982 1.03303 1.20567 0.97050 0.90035 1.03182 1.21385 0.92980 0.95652 0.89966 1.22027 1.01804 0.95004 1.00561 1.21579 0.94196 0.96895 0.97441 1.22127 1.00351 1.01169 0.96861 1.22804 0.96529 0.88827 0.97267 1.67520 1.05649 1.21641 1.23877 0.93003 0.96843 0.95620 0.92381 0.96788 0.84807 0.91428 0.96140 0.92523 0.89924 0.89759 0.90471 0.84858 0.85013 0.84987 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 11 N -0.69 -13.07 6.50 -113.78 -0.74 -13.81 16 12 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 13 C -0.11 -1.40 5.33 -26.73 -0.14 -1.55 16 14 C -0.07 -0.75 5.61 -27.88 -0.16 -0.90 16 15 C 0.14 1.55 6.17 -82.58 -0.51 1.04 16 16 C -0.17 -1.58 9.71 -39.44 -0.38 -1.96 16 17 C -0.08 -0.59 10.18 -39.28 -0.40 -0.99 16 18 C -0.19 -1.46 10.11 -39.44 -0.40 -1.86 16 19 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 20 N -0.48 -5.90 9.89 -9.47 -0.09 -5.99 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.33 6.10 8.73 -39.29 -0.34 5.75 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.13 0.92 7.95 -52.49 -0.42 0.51 16 34 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -32.47 307.81 -9.04 -41.51 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.77 Total: -0.06 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.79 Total: -16.54 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.10 Total: -46.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.47 -9.04 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693688363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.506 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds