Wall clock time and date at job start Mon Mar 30 2020 03:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99670 * 2 1 4 4 H 1.48497 * 109.46906 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.47076 * 29.99561 * 3 2 1 6 6 H 1.48492 * 109.47172 * 149.99708 * 3 2 1 7 7 C 1.37874 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47011 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46687 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99586 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.46894 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46835 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46726 * 180.02562 * 14 13 12 16 16 C 1.38232 * 119.61338 * 125.00016 * 15 14 13 17 17 C 1.38624 * 119.15705 * 179.97438 * 16 15 14 18 18 C 1.38675 * 118.42145 * 0.02562 * 17 16 15 19 19 C 1.38178 * 119.16507 * 359.97438 * 18 17 16 20 20 N 1.31847 * 119.62208 * 304.72894 * 15 14 13 21 21 H 0.96996 * 120.00702 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47042 * 60.00187 * 9 7 2 23 23 H 1.08999 * 109.46983 * 300.00413 * 9 7 2 24 24 H 1.08996 * 109.47196 * 60.00121 * 10 9 7 25 25 H 1.08999 * 109.47453 * 299.99965 * 10 9 7 26 26 H 1.00897 * 111.00336 * 56.04810 * 11 10 9 27 27 H 1.09003 * 109.46685 * 60.00580 * 12 11 10 28 28 H 1.08990 * 109.47234 * 300.00017 * 12 11 10 29 29 H 1.08999 * 109.46987 * 60.00305 * 13 12 11 30 30 H 1.09000 * 109.47102 * 300.00131 * 13 12 11 31 31 H 1.08999 * 109.47230 * 60.00274 * 14 13 12 32 32 H 1.09000 * 109.47236 * 299.99870 * 14 13 12 33 33 H 1.07995 * 120.42020 * 359.95593 * 16 15 14 34 34 H 1.08003 * 120.79128 * 180.02562 * 17 16 15 35 35 H 1.08003 * 120.41790 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.61563 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 2.4356 -6.0758 0.0036 13 6 1.6356 -7.3800 0.0048 14 6 2.5986 -8.5689 0.0059 15 6 1.8105 -9.8535 0.0064 16 6 2.0412 -10.7968 -0.9774 17 6 1.3114 -11.9753 -0.9675 18 6 0.3721 -12.1616 0.0356 19 6 0.1965 -11.1737 0.9856 20 7 0.9129 -10.0670 0.9482 21 1 -0.4851 0.8399 -0.0004 22 1 0.6242 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.8721 -3.6034 0.8926 25 1 2.8722 -3.6050 -0.8873 26 1 0.8749 -4.9848 -0.7783 27 1 3.0636 -6.0344 0.8937 28 1 3.0635 -6.0351 -0.8863 29 1 1.0073 -7.4216 -0.8849 30 1 1.0079 -7.4204 0.8951 31 1 3.2265 -8.5271 0.8958 32 1 3.2265 -8.5287 -0.8841 33 1 2.7805 -10.6178 -1.7440 34 1 1.4704 -12.7305 -1.7231 35 1 -0.2141 -13.0679 0.0743 36 1 -0.5326 -11.3114 1.7703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693688363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:41 Heat of formation + Delta-G solvation = -10.160951 kcal Electronic energy + Delta-G solvation = -15036.924591 eV Core-core repulsion = 12519.030251 eV Total energy + Delta-G solvation = -2517.894340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07444 -37.97615 -35.73490 -34.58048 -33.24562 -32.17536 -30.27613 -27.17895 -25.39056 -24.38871 -22.96505 -22.58844 -21.70978 -18.51938 -17.73849 -17.22049 -16.88885 -16.50983 -16.32944 -15.70403 -15.37086 -14.98702 -14.70235 -14.27528 -14.03396 -13.97597 -13.43124 -13.08919 -12.85381 -12.80353 -12.59301 -12.38202 -12.17006 -11.95970 -11.60895 -11.40094 -11.22711 -10.76259 -10.56964 -10.27130 -9.83959 -9.26973 -8.20554 -6.32656 0.21869 0.41993 1.40265 1.42496 1.53749 2.40637 2.88232 3.12596 3.31957 3.46412 3.84239 4.04843 4.10530 4.24185 4.28972 4.33465 4.46595 4.55983 4.58308 4.69077 4.75818 4.78747 4.88003 4.97276 5.05993 5.18940 5.30938 5.32988 5.41224 5.45924 5.66505 5.78319 5.86136 6.14466 6.29493 6.54874 6.84793 7.13787 7.36765 8.91880 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.074828 B = 0.003045 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.103940 B = 9193.096728 C = 9379.747286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.704 5.704 12 C 0.062 3.938 13 C -0.094 4.094 14 C -0.063 4.063 15 C 0.110 3.890 16 C -0.177 4.177 17 C -0.078 4.078 18 C -0.180 4.180 19 C 0.081 3.919 20 N -0.517 5.517 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.008 1.008 24 H 0.057 0.943 25 H 0.021 0.979 26 H 0.337 0.663 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -25.459 -3.001 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.335 5.335 12 C -0.067 4.067 13 C -0.133 4.133 14 C -0.101 4.101 15 C -0.027 4.027 16 C -0.197 4.197 17 C -0.104 4.104 18 C -0.199 4.199 19 C -0.076 4.076 20 N -0.227 5.227 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.155 0.845 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.319 -24.726 -1.667 25.156 hybrid contribution 0.339 0.424 -1.351 1.456 sum 4.658 -24.302 -3.018 24.928 Atomic orbital electron populations 1.70115 1.07919 1.27873 1.51414 1.26027 0.95804 1.03547 0.94565 0.85376 0.78593 0.78059 0.78575 1.19568 1.20687 1.18656 1.21628 0.93598 0.92212 1.50977 0.92000 1.18937 0.94360 0.92469 0.94960 1.21779 0.95566 0.88354 0.98806 1.60486 1.20727 1.02144 1.50149 1.21999 0.94400 0.89698 1.00639 1.21301 0.97819 0.92152 1.02006 1.20508 0.96531 0.88929 1.04181 1.21506 0.93694 0.96479 0.90991 1.22299 1.02202 0.94931 1.00242 1.22018 0.93405 0.97072 0.97868 1.22475 1.00099 1.01469 0.95879 1.23180 0.96912 0.88925 0.98558 1.67451 1.06858 1.23246 1.25130 0.92697 0.99064 0.98960 0.92427 0.96046 0.84520 0.91355 0.94505 0.92697 0.92326 0.89961 0.88242 0.82751 0.81923 0.82097 0.81444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.68 5.23 29.85 0.16 1.84 16 10 C 0.08 3.70 5.62 86.30 0.49 4.19 16 11 N -0.70 -26.74 6.50 -513.88 -3.34 -30.08 16 12 C 0.06 1.80 5.69 86.30 0.49 2.29 16 13 C -0.09 -2.45 5.33 30.60 0.16 -2.29 16 14 C -0.06 -1.29 5.61 29.85 0.17 -1.12 16 15 C 0.11 2.39 6.17 42.56 0.26 2.66 16 16 C -0.18 -2.85 9.71 22.36 0.22 -2.64 16 17 C -0.08 -1.01 10.18 22.47 0.23 -0.78 16 18 C -0.18 -2.45 10.11 22.36 0.23 -2.23 16 19 C 0.08 1.53 11.18 84.67 0.95 2.47 16 20 N -0.52 -12.81 9.89 -183.89 -1.82 -14.63 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.34 12.45 8.73 -89.70 -0.78 11.67 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.54 7.87 -2.39 -0.02 1.52 16 33 H 0.15 1.70 7.95 -2.91 -0.02 1.67 16 34 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -70.91 307.81 1.45 -69.46 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.26 Total: 13.35 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 4.04 Total: -27.07 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.88 Total: -102.78 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.91 1.45 -69.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693688363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.302 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds