Wall clock time and date at job start Mon Mar 30 2020 04:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47204 * 2 1 4 4 C 1.50707 * 109.46797 * 240.00335 * 2 1 3 5 5 H 1.07992 * 119.99855 * 240.00139 * 4 2 1 6 6 C 1.37874 * 119.99887 * 59.99847 * 4 2 1 7 7 N 1.31523 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46704 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46991 * 120.00366 * 8 6 4 11 11 H 1.48496 * 109.47297 * 240.00346 * 8 6 4 12 12 N 1.46899 * 109.47423 * 120.00409 * 2 1 3 13 13 C 1.46892 * 111.00513 * 203.50905 * 12 2 1 14 14 H 1.09002 * 109.47140 * 327.18580 * 13 12 2 15 15 C 1.52999 * 109.46915 * 87.17577 * 13 12 2 16 16 C 1.52998 * 109.47443 * 207.18147 * 13 12 2 17 17 C 1.50693 * 109.47196 * 65.00151 * 16 13 12 18 18 C 1.38228 * 119.62139 * 125.00172 * 17 16 13 19 19 C 1.38621 * 119.16331 * 179.97438 * 18 17 16 20 20 C 1.38672 * 118.42351 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.15990 * 0.02562 * 20 19 18 22 22 N 1.31858 * 119.61723 * 304.72524 * 17 16 13 23 23 H 1.08999 * 109.47125 * 53.92024 * 1 2 3 24 24 H 1.08995 * 109.47176 * 173.92846 * 1 2 3 25 25 H 1.09006 * 109.46357 * 293.92303 * 1 2 3 26 26 H 0.96995 * 119.99638 * 179.97438 * 7 6 4 27 27 H 1.00908 * 111.00109 * 79.55574 * 12 2 1 28 28 H 1.08999 * 109.47718 * 304.46971 * 15 13 12 29 29 H 1.08999 * 109.46965 * 64.46758 * 15 13 12 30 30 H 1.09002 * 109.47457 * 184.46663 * 15 13 12 31 31 H 1.09002 * 109.47073 * 304.99344 * 16 13 12 32 32 H 1.09005 * 109.47042 * 185.00120 * 16 13 12 33 33 H 1.08005 * 120.41582 * 359.95183 * 18 17 16 34 34 H 1.08003 * 120.78962 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.41907 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.62021 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 3.1472 -2.2861 -3.6040 10 1 1.1675 -1.5862 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 7 2.0198 -0.6926 1.1994 13 6 3.3808 -0.2575 1.5397 14 1 3.9258 -0.0206 0.6259 15 6 3.3114 0.9859 2.4287 16 6 4.1030 -1.3798 2.2879 17 6 4.2802 -2.5621 1.3706 18 6 5.5437 -3.0832 1.1640 19 6 5.6957 -4.1712 0.3186 20 6 4.5661 -4.6973 -0.2898 21 6 3.3352 -4.1233 -0.0353 22 7 3.2274 -3.0911 0.7785 23 1 -0.3633 0.6052 -0.8305 24 1 -0.3633 -1.0218 -0.1087 25 1 -0.3632 0.4168 0.9395 26 1 0.7094 1.1620 -3.4843 27 1 1.9793 -1.6938 1.0806 28 1 2.7286 1.7588 1.9276 29 1 2.8366 0.7294 3.3757 30 1 4.3196 1.3553 2.6161 31 1 3.5125 -1.6774 3.1545 32 1 5.0799 -1.0264 2.6181 33 1 6.4017 -2.6478 1.6547 34 1 6.6707 -4.5996 0.1387 35 1 4.6474 -5.5451 -0.9540 36 1 2.4506 -4.5268 -0.5055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694082456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:01 Heat of formation + Delta-G solvation = 29.907144 kcal Electronic energy + Delta-G solvation = -16926.815281 eV Core-core repulsion = 14410.658424 eV Total energy + Delta-G solvation = -2516.156857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99500 -36.53421 -33.61892 -32.13605 -31.59411 -30.18815 -26.86546 -26.55398 -24.87218 -23.23012 -22.01768 -19.99313 -19.49202 -16.66210 -16.31473 -15.94590 -15.27762 -14.86914 -14.50877 -13.62824 -13.55332 -13.31688 -12.89139 -12.36600 -12.07270 -11.77085 -11.68217 -11.48994 -11.09439 -11.05408 -10.83279 -10.61919 -10.42970 -10.06883 -9.87723 -9.59517 -9.54571 -8.96526 -8.80150 -8.61101 -8.24890 -6.92571 -5.84584 -3.94059 1.40505 1.56174 3.30253 3.38449 3.41172 4.09907 4.49573 4.61417 4.90675 5.09064 5.26038 5.37035 5.39948 5.50989 5.67592 5.75514 5.91545 5.96741 6.14472 6.24907 6.33396 6.39187 6.40713 6.62099 6.84514 6.95729 7.01379 7.11051 7.33150 7.51851 7.75939 7.93899 8.26466 8.35641 8.48208 8.58579 9.10548 9.31139 9.72296 11.16403 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.011376 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.808464 B = 2460.774931 C = 3498.765838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.209 3.791 3 H 0.025 0.975 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.881 3.119 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.697 5.697 13 C 0.095 3.905 14 H 0.043 0.957 15 C -0.135 4.135 16 C -0.075 4.075 17 C 0.139 3.861 18 C -0.179 4.179 19 C -0.077 4.077 20 C -0.188 4.188 21 C 0.115 3.885 22 N -0.458 5.458 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.011 0.989 26 H 0.257 0.743 27 H 0.357 0.643 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -7.744 7.240 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 H 0.043 0.957 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.709 3.291 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.337 5.337 13 C -0.016 4.016 14 H 0.061 0.939 15 C -0.193 4.193 16 C -0.113 4.113 17 C 0.002 3.998 18 C -0.199 4.199 19 C -0.103 4.103 20 C -0.208 4.208 21 C -0.042 4.042 22 N -0.168 5.168 23 H 0.093 0.907 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.184 0.816 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.249 -6.870 7.696 12.609 hybrid contribution 1.739 -1.275 -2.121 3.025 sum 8.988 -8.146 5.575 13.350 Atomic orbital electron populations 1.21644 0.98205 0.99434 0.98667 1.19083 0.92002 0.93788 0.85086 0.95687 1.22034 1.30674 1.12341 0.91666 0.92277 1.24946 0.95268 0.94986 0.98672 1.69922 1.37245 1.23062 1.22834 0.86722 0.78621 0.79790 0.83953 1.20120 1.21103 1.21307 1.61165 1.18557 1.14136 1.39840 1.21189 0.91783 0.92408 0.96239 0.93861 1.21787 0.99675 0.98087 0.99727 1.20872 1.01272 0.92138 0.97042 1.21414 0.88736 0.95176 0.94486 1.21905 0.98359 0.98339 1.01265 1.21468 0.98733 0.95183 0.94911 1.22053 0.94092 1.02405 1.02253 1.22771 0.97191 0.91003 0.93246 1.67177 1.32905 1.09049 1.07670 0.90691 0.95787 0.96976 0.93322 0.81593 0.92458 0.93008 0.94078 0.89717 0.90683 0.85299 0.85450 0.85344 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.20 37.16 0.34 -2.82 16 2 C 0.21 5.52 2.40 -68.86 -0.17 5.35 16 3 H 0.03 0.73 7.26 -51.93 -0.38 0.35 16 4 C -0.53 -14.81 8.20 -34.44 -0.28 -15.09 16 5 H 0.06 1.65 6.55 -52.49 -0.34 1.31 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -26.27 11.39 55.43 0.63 -25.64 16 8 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 N -0.70 -15.89 6.04 -100.96 -0.61 -16.49 16 13 C 0.10 1.88 2.42 -67.72 -0.16 1.71 16 14 H 0.04 0.99 7.56 -51.93 -0.39 0.59 16 15 C -0.13 -2.33 9.44 37.16 0.35 -1.98 16 16 C -0.08 -1.20 5.25 -27.89 -0.15 -1.34 16 17 C 0.14 2.36 6.17 -82.59 -0.51 1.85 16 18 C -0.18 -2.54 9.71 -39.44 -0.38 -2.92 16 19 C -0.08 -1.01 10.18 -39.28 -0.40 -1.41 16 20 C -0.19 -2.62 10.11 -39.44 -0.40 -3.02 16 21 C 0.12 1.91 11.04 -17.55 -0.19 1.72 16 22 N -0.46 -8.61 6.24 -9.48 -0.06 -8.67 16 23 H 0.07 2.10 6.26 -51.93 -0.32 1.77 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.36 8.16 4.86 -39.29 -0.19 7.96 16 28 H 0.06 1.09 7.53 -51.93 -0.39 0.70 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 33 H 0.13 1.46 7.95 -52.48 -0.42 1.04 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -31.05 292.99 -8.05 -39.11 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.36 Total: 6.61 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.04 Total: -16.26 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.04 Total: -50.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.05 -8.05 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694082456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.013 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds