Wall clock time and date at job start Mon Mar 30 2020 04:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47204 * 2 1 4 4 C 1.50707 * 109.46797 * 240.00335 * 2 1 3 5 5 H 1.07992 * 119.99855 * 240.00139 * 4 2 1 6 6 C 1.37874 * 119.99887 * 59.99847 * 4 2 1 7 7 N 1.31523 * 120.00109 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00007 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46704 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46991 * 120.00366 * 8 6 4 11 11 H 1.48496 * 109.47297 * 240.00346 * 8 6 4 12 12 N 1.46899 * 109.47423 * 120.00409 * 2 1 3 13 13 C 1.46892 * 111.00513 * 203.50905 * 12 2 1 14 14 H 1.09002 * 109.47140 * 327.18580 * 13 12 2 15 15 C 1.52999 * 109.46915 * 87.17577 * 13 12 2 16 16 C 1.52998 * 109.47443 * 207.18147 * 13 12 2 17 17 C 1.50693 * 109.47196 * 65.00151 * 16 13 12 18 18 C 1.38228 * 119.62139 * 125.00172 * 17 16 13 19 19 C 1.38621 * 119.16331 * 179.97438 * 18 17 16 20 20 C 1.38672 * 118.42351 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.15990 * 0.02562 * 20 19 18 22 22 N 1.31858 * 119.61723 * 304.72524 * 17 16 13 23 23 H 1.08999 * 109.47125 * 53.92024 * 1 2 3 24 24 H 1.08995 * 109.47176 * 173.92846 * 1 2 3 25 25 H 1.09006 * 109.46357 * 293.92303 * 1 2 3 26 26 H 0.96995 * 119.99638 * 179.97438 * 7 6 4 27 27 H 1.00908 * 111.00109 * 79.55574 * 12 2 1 28 28 H 1.08999 * 109.47718 * 304.46971 * 15 13 12 29 29 H 1.08999 * 109.46965 * 64.46758 * 15 13 12 30 30 H 1.09002 * 109.47457 * 184.46663 * 15 13 12 31 31 H 1.09002 * 109.47073 * 304.99344 * 16 13 12 32 32 H 1.09005 * 109.47042 * 185.00120 * 16 13 12 33 33 H 1.08005 * 120.41582 * 359.95183 * 18 17 16 34 34 H 1.08003 * 120.78962 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.41907 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.62021 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 3.1472 -2.2861 -3.6040 10 1 1.1675 -1.5862 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 7 2.0198 -0.6926 1.1994 13 6 3.3808 -0.2575 1.5397 14 1 3.9258 -0.0206 0.6259 15 6 3.3114 0.9859 2.4287 16 6 4.1030 -1.3798 2.2879 17 6 4.2802 -2.5621 1.3706 18 6 5.5437 -3.0832 1.1640 19 6 5.6957 -4.1712 0.3186 20 6 4.5661 -4.6973 -0.2898 21 6 3.3352 -4.1233 -0.0353 22 7 3.2274 -3.0911 0.7785 23 1 -0.3633 0.6052 -0.8305 24 1 -0.3633 -1.0218 -0.1087 25 1 -0.3632 0.4168 0.9395 26 1 0.7094 1.1620 -3.4843 27 1 1.9793 -1.6938 1.0806 28 1 2.7286 1.7588 1.9276 29 1 2.8366 0.7294 3.3757 30 1 4.3196 1.3553 2.6161 31 1 3.5125 -1.6774 3.1545 32 1 5.0799 -1.0264 2.6181 33 1 6.4017 -2.6478 1.6547 34 1 6.6707 -4.5996 0.1387 35 1 4.6474 -5.5451 -0.9540 36 1 2.4506 -4.5268 -0.5055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694082456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:00 Heat of formation + Delta-G solvation = 10.651951 kcal Electronic energy + Delta-G solvation = -16927.650249 eV Core-core repulsion = 14410.658424 eV Total energy + Delta-G solvation = -2516.991825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16420 -38.20453 -35.47411 -33.31662 -33.22675 -31.80147 -28.70776 -27.81117 -27.08221 -24.37386 -23.27108 -21.88201 -21.12007 -18.55509 -17.63734 -17.21006 -16.70292 -16.43000 -16.29098 -15.28846 -14.87792 -14.79149 -14.22650 -13.94456 -13.80548 -13.33998 -13.15168 -12.96219 -12.86030 -12.76539 -12.69604 -12.28519 -12.18175 -11.86691 -11.82948 -11.43468 -11.02892 -10.67570 -10.50215 -10.12547 -9.77491 -8.81815 -7.99479 -6.19024 0.27134 0.48034 1.32236 1.33888 1.44322 2.40290 2.93671 3.19213 3.45731 3.81209 3.95431 4.07374 4.21651 4.32556 4.39386 4.52568 4.63825 4.82387 4.83689 4.92957 4.98142 5.00283 5.05948 5.23290 5.28013 5.32017 5.33280 5.38254 5.55065 5.60245 5.76287 5.88081 6.12371 6.33864 6.58219 7.03155 7.17447 7.41839 7.53473 8.97654 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.011376 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.808464 B = 2460.774931 C = 3498.765838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.215 3.785 3 H -0.008 1.008 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.696 5.696 13 C 0.092 3.908 14 H 0.006 0.994 15 C -0.128 4.128 16 C -0.066 4.066 17 C 0.107 3.893 18 C -0.175 4.175 19 C -0.076 4.076 20 C -0.184 4.184 21 C 0.082 3.918 22 N -0.499 5.499 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.026 0.974 26 H 0.258 0.742 27 H 0.357 0.643 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -9.175 7.617 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 H 0.009 0.991 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.336 5.336 13 C -0.019 4.019 14 H 0.024 0.976 15 C -0.186 4.186 16 C -0.104 4.104 17 C -0.030 4.030 18 C -0.195 4.195 19 C -0.102 4.102 20 C -0.203 4.203 21 C -0.074 4.074 22 N -0.209 5.209 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.185 0.815 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.175 0.825 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.516 -8.312 8.086 15.002 hybrid contribution 1.070 -0.847 -2.203 2.591 sum 10.587 -9.159 5.884 15.185 Atomic orbital electron populations 1.21492 0.98248 0.98693 0.98446 1.18859 0.91980 0.92205 0.86398 0.99053 1.22272 1.30471 1.12257 0.92513 0.92378 1.25699 0.95582 0.95750 1.01625 1.70052 1.38221 1.24282 1.23489 0.85713 0.78183 0.78755 0.80258 1.19463 1.20531 1.21026 1.61134 1.20881 1.14017 1.37569 1.21274 0.89984 0.94944 0.95702 0.97579 1.21730 1.01321 0.96192 0.99357 1.20824 1.02569 0.90569 0.96412 1.21676 0.89745 0.96043 0.95519 1.22270 0.98100 0.98246 1.00875 1.21969 1.00108 0.94459 0.93632 1.22390 0.93307 1.02649 1.01972 1.22985 0.98742 0.91594 0.94120 1.66992 1.34585 1.10355 1.09017 0.92906 0.96158 0.95542 0.93274 0.81523 0.95277 0.91545 0.90931 0.89284 0.87126 0.82163 0.81538 0.82472 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.92 9.20 71.98 0.66 -5.25 16 2 C 0.21 11.72 2.40 44.17 0.11 11.83 16 3 H -0.01 -0.51 7.26 -2.39 -0.02 -0.53 16 4 C -0.54 -30.72 8.20 25.60 0.21 -30.51 16 5 H 0.06 3.30 6.55 -2.91 -0.02 3.28 16 6 C 0.01 0.68 5.30 84.65 0.45 1.12 16 7 N -0.92 -55.44 11.39 21.45 0.24 -55.19 16 8 Si 0.94 45.41 29.54 68.60 2.03 47.44 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 N -0.70 -32.29 6.04 -473.32 -2.86 -35.15 16 13 C 0.09 3.62 2.42 44.92 0.11 3.73 16 14 H 0.01 0.28 7.56 -2.39 -0.02 0.27 16 15 C -0.13 -4.33 9.44 71.98 0.68 -3.65 16 16 C -0.07 -1.98 5.25 29.85 0.16 -1.83 16 17 C 0.11 3.49 6.17 42.55 0.26 3.76 16 18 C -0.18 -4.42 9.71 22.36 0.22 -4.21 16 19 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 20 C -0.18 -4.67 10.11 22.36 0.23 -4.44 16 21 C 0.08 2.69 11.04 84.67 0.93 3.62 16 22 N -0.50 -18.68 6.24 -183.89 -1.15 -19.83 16 23 H 0.05 3.04 6.26 -2.39 -0.01 3.03 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 27 H 0.36 16.62 4.86 -89.69 -0.44 16.18 16 28 H 0.03 1.12 7.53 -2.39 -0.02 1.10 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.11 2.49 7.87 -2.38 -0.02 2.47 16 33 H 0.16 2.90 7.95 -2.91 -0.02 2.88 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -68.77 292.99 3.12 -65.65 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.62 Total: 24.38 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.24 Total: -27.30 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.76 Total: -110.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.77 3.12 -65.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694082456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.301 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds