Wall clock time and date at job start Mon Mar 30 2020 03:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47009 * 239.99729 * 3 2 1 5 5 H 1.48501 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47293 * 120.00113 * 3 2 1 7 7 C 1.37876 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99485 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47099 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46992 * 180.02562 * 10 9 7 12 12 C 1.46500 * 119.99810 * 270.00306 * 11 10 9 13 13 C 1.53002 * 109.46869 * 269.99977 * 12 11 10 14 14 N 1.46900 * 109.47180 * 180.02562 * 13 12 11 15 15 C 1.39672 * 119.99644 * 90.00174 * 11 10 9 16 16 C 1.38918 * 120.07035 * 179.97438 * 15 11 10 17 17 C 1.38103 * 119.92232 * 180.26003 * 16 15 11 18 18 C 1.38291 * 120.07426 * 359.43747 * 17 16 15 19 19 C 1.38281 * 120.14889 * 0.56232 * 18 17 16 20 20 C 1.38103 * 120.07737 * 359.72142 * 19 18 17 21 21 H 0.96995 * 119.99849 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47111 * 60.00430 * 9 7 2 23 23 H 1.09002 * 109.47355 * 299.99924 * 9 7 2 24 24 H 1.08997 * 109.46986 * 60.00537 * 10 9 7 25 25 H 1.08993 * 109.47306 * 300.00233 * 10 9 7 26 26 H 1.08998 * 109.47261 * 29.99830 * 12 11 10 27 27 H 1.08996 * 109.46806 * 150.00562 * 12 11 10 28 28 H 1.09003 * 109.47500 * 300.00137 * 13 12 11 29 29 H 1.09001 * 109.47367 * 60.00504 * 13 12 11 30 30 H 1.00900 * 111.00349 * 180.02562 * 14 13 12 31 31 H 1.00899 * 111.00258 * 303.95963 * 14 13 12 32 32 H 1.08002 * 120.03585 * 359.97438 * 16 15 11 33 33 H 1.08004 * 119.95970 * 179.72372 * 17 16 15 34 34 H 1.07994 * 119.92283 * 180.28458 * 18 17 16 35 35 H 1.07998 * 119.96595 * 179.74375 * 19 18 17 36 36 H 1.08001 * 120.04036 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 1.1471 -5.5649 1.2710 13 6 2.2690 -6.5069 1.7123 14 7 1.9021 -7.1432 2.9845 15 6 1.1632 -5.5358 -1.2074 16 6 0.4691 -6.7391 -1.2087 17 6 0.1296 -7.3373 -2.4063 18 6 0.4697 -6.7339 -3.6033 19 6 1.1606 -5.5361 -3.6055 20 6 1.5083 -4.9353 -2.4116 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8920 24 1 2.8726 -3.6039 0.8909 25 1 2.8714 -3.6047 -0.8890 26 1 0.9970 -4.7977 2.0305 27 1 0.2259 -6.1329 1.1411 28 1 2.4192 -7.2742 0.9528 29 1 3.1903 -5.9390 1.8423 30 1 2.6278 -7.7704 3.2977 31 1 1.6943 -6.4509 3.6885 32 1 0.1993 -7.2086 -0.2742 33 1 -0.4062 -8.2751 -2.4080 34 1 0.1990 -7.2015 -4.5383 35 1 1.4283 -5.0695 -4.5420 36 1 2.0483 -4.0000 -2.4141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703957834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:32 Heat of formation + Delta-G solvation = 22.626169 kcal Electronic energy + Delta-G solvation = -16215.017432 eV Core-core repulsion = 13698.544848 eV Total energy + Delta-G solvation = -2516.472584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23636 -36.54187 -34.41416 -33.00211 -30.83964 -30.02550 -29.07888 -26.62229 -24.41976 -22.54952 -21.84714 -21.16964 -19.59462 -17.29527 -16.49810 -16.02140 -15.21313 -14.93765 -14.56418 -14.39596 -14.16838 -13.62513 -13.19257 -12.93375 -12.82566 -12.28086 -12.19859 -11.84362 -11.42414 -11.07097 -10.96277 -10.89738 -10.77645 -10.37675 -10.04293 -9.87653 -9.23954 -9.14756 -8.75893 -8.48307 -8.39289 -6.72529 -6.04666 -4.09436 1.89078 2.08108 3.29312 3.34323 3.35731 3.59451 4.34889 4.42012 4.71906 5.12463 5.27763 5.30407 5.32482 5.39528 5.59231 5.67196 5.87588 5.88510 5.95787 6.04885 6.19677 6.24660 6.43435 6.48832 6.78964 6.81481 6.91842 7.02482 7.06902 7.31479 7.34821 7.58407 7.66132 7.79096 8.01237 8.10575 8.34418 8.97857 9.55087 11.05964 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.006990 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.323691 B = 4004.989373 C = 5036.103173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.011 3.989 10 C 0.124 3.876 11 N -0.620 5.620 12 C 0.126 3.874 13 C 0.042 3.958 14 N -0.850 5.850 15 C 0.229 3.771 16 C -0.208 4.208 17 C -0.078 4.078 18 C -0.195 4.195 19 C -0.075 4.075 20 C -0.192 4.192 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.016 0.984 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.340 0.660 31 H 0.341 0.659 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 -13.166 -0.111 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.027 4.027 10 C 0.003 3.997 11 N -0.328 5.328 12 C 0.001 3.999 13 C -0.090 4.090 14 N -0.379 5.379 15 C 0.125 3.875 16 C -0.231 4.231 17 C -0.097 4.097 18 C -0.215 4.215 19 C -0.094 4.094 20 C -0.214 4.214 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.500 -13.244 -0.337 13.482 hybrid contribution 1.247 1.538 0.428 2.026 sum 3.747 -11.706 0.091 12.291 Atomic orbital electron populations 1.69967 1.06083 1.26819 1.50081 1.25000 0.94817 0.99239 0.95102 0.86649 0.79579 0.83084 0.78630 1.20165 1.21232 1.20248 1.21078 0.92914 0.90874 1.51643 0.92690 1.19439 0.94461 0.91005 0.97835 1.21824 0.94962 0.82206 1.00748 1.46844 1.60628 1.23457 1.01891 1.21233 0.96917 0.95582 0.86128 1.22282 0.97365 0.97400 0.91926 1.58666 1.48984 1.24070 1.06220 1.17905 0.92091 0.91230 0.86243 1.20670 1.06694 0.97302 0.98404 1.20762 0.98119 0.98626 0.92196 1.20756 1.05431 0.97926 0.97374 1.20844 0.96577 0.94810 0.97138 1.20863 1.07120 1.02359 0.91046 0.92846 0.96035 0.96600 0.92380 0.91804 0.90848 0.90401 0.90966 0.95364 0.84784 0.84718 0.86344 0.86996 0.87266 0.86743 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.01 0.27 5.30 -27.88 -0.15 0.12 16 10 C 0.12 2.52 5.10 -4.03 -0.02 2.50 16 11 N -0.62 -11.18 2.61 -171.75 -0.45 -11.63 16 12 C 0.13 1.95 5.42 -4.04 -0.02 1.92 16 13 C 0.04 0.55 7.11 -3.82 -0.03 0.53 16 14 N -0.85 -9.27 9.62 -10.37 -0.10 -9.37 16 15 C 0.23 4.12 6.55 -83.78 -0.55 3.57 16 16 C -0.21 -3.33 9.21 -39.38 -0.36 -3.70 16 17 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 18 C -0.19 -2.84 10.04 -39.55 -0.40 -3.24 16 19 C -0.07 -1.19 10.04 -39.61 -0.40 -1.58 16 20 C -0.19 -3.46 9.21 -39.38 -0.36 -3.83 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 25 H 0.06 1.28 6.20 -51.93 -0.32 0.96 16 26 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 27 H 0.08 1.19 6.20 -51.93 -0.32 0.86 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.34 3.04 9.08 -39.29 -0.36 2.69 16 31 H 0.34 3.41 8.99 -39.29 -0.35 3.06 16 32 H 0.12 1.76 6.14 -52.49 -0.32 1.44 16 33 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.42 6.14 -52.49 -0.32 2.10 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -30.07 300.64 -8.73 -38.81 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.34 Total: 5.77 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.09 Total: -18.50 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.19 Total: -46.97 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.07 -8.73 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703957834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.432 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds