Wall clock time and date at job start Mon Mar 30 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39904 * 109.46795 * 2 1 4 4 F 1.39894 * 109.47429 * 240.00440 * 2 1 3 5 5 C 1.52999 * 109.46989 * 119.99771 * 2 1 3 6 6 N 1.46905 * 109.47144 * 185.84262 * 5 2 1 7 7 C 1.46893 * 111.00426 * 76.32522 * 6 5 2 8 8 C 1.53237 * 109.34457 * 172.74846 * 7 6 5 9 9 N 1.47082 * 108.51869 * 53.82908 * 8 7 6 10 10 C 1.36936 * 120.87828 * 128.79827 * 9 8 7 11 11 H 1.08000 * 120.00179 * 206.98613 * 10 9 8 12 12 C 1.38819 * 120.00208 * 26.98422 * 10 9 8 13 13 N 1.31613 * 119.99682 * 18.13155 * 12 10 9 14 14 Si 1.86797 * 119.99849 * 198.13364 * 12 10 9 15 15 H 1.48504 * 109.47075 * 60.00010 * 14 12 10 16 16 H 1.48500 * 109.47048 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47466 * 299.99926 * 14 12 10 18 18 C 1.47073 * 118.24005 * 308.81671 * 9 8 7 19 19 C 1.46905 * 110.99829 * 312.02381 * 6 5 2 20 20 H 1.08997 * 109.47710 * 300.00319 * 1 2 3 21 21 H 1.09003 * 109.46691 * 60.00480 * 1 2 3 22 22 H 1.09002 * 109.46898 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46915 * 65.84202 * 5 2 1 24 24 H 1.08998 * 109.47299 * 305.83628 * 5 2 1 25 25 H 1.09001 * 109.49464 * 52.78637 * 7 6 5 26 26 H 1.09009 * 109.49686 * 292.71089 * 7 6 5 27 27 H 1.08996 * 109.63221 * 173.53848 * 8 7 6 28 28 H 1.09001 * 109.62704 * 293.92591 * 8 7 6 29 29 H 0.97005 * 119.99720 * 180.02562 * 13 12 10 30 30 H 1.09005 * 109.62988 * 170.89323 * 18 9 8 31 31 H 1.08998 * 109.63281 * 291.48037 * 18 9 8 32 32 H 1.09005 * 109.48891 * 67.29336 * 19 6 5 33 33 H 1.08995 * 109.51737 * 307.23340 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2493 6 7 3.5022 -0.6003 1.3219 7 6 3.8979 0.7399 1.7747 8 6 5.4117 0.7696 2.0105 9 7 6.0841 0.3022 0.7887 10 6 7.0915 1.0330 0.2176 11 1 7.2814 0.9546 -0.8427 12 6 7.8688 1.8748 1.0014 13 7 7.8943 1.7197 2.3081 14 14 8.8785 3.2275 0.2014 15 1 7.9759 4.1515 -0.5312 16 1 9.6139 3.9813 1.2484 17 1 9.8480 2.6256 -0.7489 18 6 5.6456 -0.9706 0.1965 19 6 4.1225 -0.9317 0.0321 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7645 -1.7746 1.1985 24 1 1.5938 -0.2712 2.1362 25 1 3.3803 0.9774 2.7041 26 1 3.6340 1.4739 1.0131 27 1 5.7274 1.7884 2.2353 28 1 5.6652 0.1153 2.8446 29 1 8.4372 2.3081 2.8558 30 1 6.1158 -1.1023 -0.7780 31 1 5.9219 -1.7948 0.8540 32 1 3.8554 -0.1746 -0.7051 33 1 3.7678 -1.9064 -0.3028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707504208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:52 Heat of formation + Delta-G solvation = -84.508116 kcal Electronic energy + Delta-G solvation = -17919.195720 eV Core-core repulsion = 14843.847915 eV Total energy + Delta-G solvation = -3075.347805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.124 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.08992 -48.00580 -39.59518 -36.37004 -33.81000 -32.50069 -31.63449 -28.98663 -26.39886 -24.46687 -24.17390 -22.64642 -20.99011 -18.85036 -18.63634 -17.64354 -17.30464 -16.87015 -16.02382 -15.75062 -15.59832 -15.23798 -14.85483 -14.70615 -14.39202 -14.13292 -13.69303 -13.51313 -13.20865 -13.10560 -12.92124 -12.81400 -12.59033 -12.48279 -12.30394 -11.99010 -11.82114 -11.60177 -11.41839 -10.60100 -9.26252 -8.68132 -7.90036 -5.34438 1.44096 1.47251 1.54294 2.48964 2.75182 3.00184 3.24136 3.33578 3.48517 3.65297 3.66553 4.24124 4.28112 4.35677 4.57223 4.62909 4.64819 4.71026 4.74102 4.85262 4.86119 4.99716 5.02773 5.15005 5.34529 5.58253 5.65454 6.05632 6.11764 6.34865 7.10948 7.81350 8.36185 9.16787 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.007445 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.222764 B = 3760.184007 C = 3828.880978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.234 3.766 3 F -0.218 7.218 4 F -0.212 7.212 5 C 0.017 3.983 6 N -0.535 5.535 7 C 0.033 3.967 8 C 0.186 3.814 9 N -0.614 5.614 10 C -0.270 4.270 11 H 0.063 0.937 12 C -0.049 4.049 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.274 1.274 18 C 0.142 3.858 19 C 0.049 3.951 20 H 0.105 0.895 21 H 0.076 0.924 22 H 0.112 0.888 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.000 1.000 29 H 0.252 0.748 30 H 0.056 0.944 31 H 0.018 0.982 32 H 0.028 0.972 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.656 -4.515 -2.604 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.197 3.803 3 F -0.200 7.200 4 F -0.194 7.194 5 C -0.112 4.112 6 N -0.257 5.257 7 C -0.095 4.095 8 C 0.060 3.940 9 N -0.338 5.338 10 C -0.400 4.400 11 H 0.081 0.919 12 C -0.244 4.244 13 N -0.579 5.579 14 Si 0.796 3.204 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.199 1.199 18 C 0.016 3.984 19 C -0.080 4.080 20 H 0.124 0.876 21 H 0.095 0.905 22 H 0.130 0.870 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.333 -4.761 -2.172 17.151 hybrid contribution 0.802 1.412 -0.921 1.867 sum -15.531 -3.349 -3.093 16.187 Atomic orbital electron populations 1.22748 0.88320 1.06997 1.05953 1.22743 0.96489 0.75397 0.85720 1.92932 1.90685 1.39460 1.96888 1.92953 1.90634 1.81057 1.54727 1.23623 0.88146 1.03630 0.95764 1.62018 1.07036 1.27883 1.28779 1.22920 0.97652 0.89118 0.99854 1.20603 0.88269 0.97991 0.87137 1.44367 1.39233 1.20803 1.29407 1.19480 1.08590 1.20133 0.91816 0.91890 1.25797 0.99197 1.03393 0.96061 1.70191 1.43383 1.39406 1.04954 0.85325 0.78333 0.79310 0.77396 1.20706 1.21506 1.19933 1.21164 0.93053 0.87654 0.96502 1.22746 0.95413 1.00532 0.89286 0.87630 0.90467 0.86955 0.85489 0.86065 0.89759 0.94335 0.92813 0.98224 0.93923 0.92541 0.96409 0.95361 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 9.38 71.98 0.68 -2.00 16 2 C 0.23 5.83 1.78 30.59 0.05 5.89 16 3 F -0.22 -7.19 13.67 44.97 0.61 -6.57 16 4 F -0.21 -6.20 13.64 44.97 0.61 -5.59 16 5 C 0.02 0.41 5.27 86.30 0.46 0.87 16 6 N -0.53 -18.72 4.83 -895.24 -4.32 -23.05 16 7 C 0.03 1.35 5.14 86.38 0.44 1.80 16 8 C 0.19 9.61 5.42 86.35 0.47 10.08 16 9 N -0.61 -33.41 3.03 -698.14 -2.12 -35.53 16 10 C -0.27 -15.84 9.62 84.04 0.81 -15.03 16 11 H 0.06 3.61 7.89 -2.91 -0.02 3.59 16 12 C -0.05 -2.85 4.90 84.86 0.42 -2.44 16 13 N -0.93 -57.19 11.26 21.65 0.24 -56.95 16 14 Si 0.97 46.55 29.59 68.60 2.03 48.58 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 C 0.14 6.48 6.69 86.35 0.58 7.06 16 19 C 0.05 1.85 4.09 86.38 0.35 2.21 16 20 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.12 2.32 7.84 -2.39 -0.02 2.30 16 25 H 0.08 2.94 7.92 -2.39 -0.02 2.92 16 26 H 0.04 1.68 5.63 -2.38 -0.01 1.66 16 27 H 0.05 3.09 6.19 -2.39 -0.01 3.07 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 30 H 0.06 2.50 7.95 -2.38 -0.02 2.48 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.03 1.17 5.84 -2.38 -0.01 1.16 16 33 H 0.09 2.96 7.73 -2.39 -0.02 2.94 16 Total: -1.00 -69.92 263.81 2.41 -67.51 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.09 Total: 3.17 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.25 Total: 8.43 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -6.20 Total: -115.52 kcal Atomic # 9 Polarization: -13.39 SS G_CDS: 1.23 Total: -12.16 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -69.92 2.41 -67.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707504208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.998 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds