Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38225 * 119.61941 * 2 1 4 4 C 1.38624 * 119.15994 * 179.97438 * 3 2 1 5 5 C 1.38671 * 118.42355 * 359.97438 * 4 3 2 6 6 C 1.38185 * 119.16139 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.61732 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47466 * 124.99687 * 7 6 5 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47092 * 180.02562 * 11 10 9 13 13 H 1.08009 * 119.99873 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99652 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00237 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47105 * 89.99867 * 16 14 12 18 18 H 1.48491 * 109.47273 * 210.00139 * 16 14 12 19 19 H 1.48503 * 109.46704 * 330.00145 * 16 14 12 20 20 N 1.31855 * 119.61708 * 180.24637 * 2 1 3 21 21 H 1.09000 * 109.46658 * 90.00121 * 1 2 3 22 22 H 1.08997 * 109.47383 * 210.00239 * 1 2 3 23 23 H 1.08998 * 109.46750 * 330.00528 * 1 2 3 24 24 H 1.08000 * 120.41858 * 359.97438 * 3 2 1 25 25 H 1.08005 * 120.79004 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.41793 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.47120 * 4.99440 * 7 6 5 28 28 H 1.08998 * 109.46862 * 245.00242 * 7 6 5 29 29 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 30 30 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 31 31 H 1.00902 * 111.00582 * 303.95797 * 9 8 7 32 32 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 33 33 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 34 34 H 1.09005 * 109.47424 * 300.00229 * 11 10 9 35 35 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 36 36 H 0.96998 * 119.99638 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2267 -0.0343 0.0016 6 6 3.4766 -1.1949 0.0016 7 6 4.1726 -2.5314 0.0033 8 6 3.6731 -3.3651 1.1849 9 7 4.3512 -4.6683 1.1862 10 6 3.8958 -5.4975 2.3101 11 6 4.6231 -6.8432 2.2783 12 6 4.1556 -7.6942 3.4309 13 1 3.4135 -7.3134 4.1171 14 6 4.6750 -8.9589 3.6093 15 7 4.2666 -9.7016 4.6148 16 14 5.9578 -9.6178 2.4220 17 1 7.3141 -9.2615 2.9108 18 1 5.8363 -11.0949 2.3317 19 1 5.7428 -9.0204 1.0795 20 7 2.1587 -1.1463 -0.0049 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6508 2.1373 -0.0004 25 1 4.1367 2.1139 0.0001 26 1 5.3057 -0.0805 0.0025 27 1 5.2484 -2.3808 0.0939 28 1 3.9563 -3.0549 -0.9280 29 1 2.5973 -3.5158 1.0943 30 1 3.8895 -2.8416 2.1162 31 1 4.2188 -5.1457 0.3072 32 1 4.1145 -4.9888 3.2489 33 1 2.8215 -5.6626 2.2278 34 1 4.4049 -7.3522 1.3394 35 1 5.6973 -6.6778 2.3607 36 1 4.6318 -10.5915 4.7401 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709722160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = -7.351834 kcal Electronic energy + Delta-G solvation = -15298.205248 eV Core-core repulsion = 12780.432720 eV Total energy + Delta-G solvation = -2517.772527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.24264 -37.89989 -35.48016 -34.43070 -33.65202 -32.25091 -30.06749 -28.14955 -26.04006 -24.05216 -22.95653 -22.54705 -21.89134 -18.96796 -17.46858 -17.27176 -16.71098 -16.42847 -16.18037 -15.74119 -15.11608 -14.97922 -14.86820 -14.53746 -13.93538 -13.75759 -13.46476 -13.19656 -13.11720 -13.00453 -12.65917 -12.51284 -12.28634 -11.88845 -11.72418 -11.61550 -11.43050 -10.77329 -10.73877 -10.31998 -9.70313 -9.37755 -8.30355 -6.35615 0.16774 0.38912 1.38336 1.40047 1.53034 2.37428 2.78648 3.05051 3.15746 3.37799 3.87673 3.96381 4.12445 4.15741 4.24549 4.35730 4.47283 4.53171 4.58597 4.67756 4.73134 4.76704 4.86379 4.93030 4.99071 5.05892 5.19533 5.27186 5.28777 5.36482 5.47887 5.61824 5.84884 6.07383 6.24175 6.50879 6.72800 7.11784 7.29294 8.86547 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.049001 B = 0.003715 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.277491 B = 7534.624910 C = 7865.230303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 C -0.180 4.180 4 C -0.072 4.072 5 C -0.181 4.181 6 C 0.117 3.883 7 C -0.058 4.058 8 C 0.075 3.925 9 N -0.690 5.690 10 C 0.086 3.914 11 C -0.003 4.003 12 C -0.538 4.538 13 H 0.029 0.971 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.959 3.041 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.245 1.245 20 N -0.518 5.518 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.162 0.838 25 H 0.166 0.834 26 H 0.155 0.845 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.344 0.656 32 H 0.053 0.947 33 H 0.012 0.988 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 24.453 -13.813 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.098 4.098 5 C -0.201 4.201 6 C -0.021 4.021 7 C -0.096 4.096 8 C -0.054 4.054 9 N -0.321 5.321 10 C -0.043 4.043 11 C -0.041 4.041 12 C -0.576 4.576 13 H 0.047 0.953 14 C -0.193 4.193 15 N -0.592 5.592 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.169 1.169 20 N -0.229 5.229 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.179 0.821 25 H 0.184 0.816 26 H 0.172 0.828 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.613 23.759 -13.399 27.325 hybrid contribution -0.216 -0.295 -0.086 0.376 sum -1.828 23.464 -13.485 27.125 Atomic orbital electron populations 1.20776 0.87570 1.03897 1.03710 1.21814 0.98241 0.88567 0.94609 1.22288 0.95485 0.99623 1.02593 1.22009 0.94674 0.99028 0.94046 1.22263 1.02485 0.92696 1.02638 1.21350 0.89411 0.96163 0.95141 1.20450 1.00229 0.90486 0.98481 1.21718 0.95488 0.89797 0.98420 1.60522 1.60491 1.04600 1.06507 1.21626 0.95751 0.93486 0.93448 1.19431 0.96530 0.92641 0.95467 1.21423 1.23827 1.00367 1.11986 0.95303 1.26057 0.99053 0.96941 0.97276 1.70076 1.45716 1.11095 1.32350 0.85536 0.78904 0.77129 0.80306 1.19090 1.20877 1.16850 1.67288 1.10392 1.31073 1.14145 0.89562 0.91929 0.88430 0.82062 0.81636 0.82775 0.88055 0.89906 0.95876 0.92452 0.83797 0.92846 0.96951 0.95987 0.95656 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.85 16 2 C 0.11 2.21 6.78 42.55 0.29 2.49 16 3 C -0.18 -2.80 9.74 22.36 0.22 -2.59 16 4 C -0.07 -1.05 10.18 22.47 0.23 -0.83 16 5 C -0.18 -3.31 9.71 22.36 0.22 -3.09 16 6 C 0.12 2.80 6.17 42.54 0.26 3.06 16 7 C -0.06 -1.38 5.87 29.85 0.18 -1.21 16 8 C 0.08 2.28 5.54 86.30 0.48 2.76 16 9 N -0.69 -23.65 6.50 -513.89 -3.34 -26.99 16 10 C 0.09 3.67 5.62 86.30 0.49 4.16 16 11 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 12 C -0.54 -32.31 9.66 25.60 0.25 -32.06 16 13 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 14 C 0.00 0.21 5.47 84.65 0.46 0.67 16 15 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 16 Si 0.96 45.36 27.47 68.60 1.88 47.24 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 20 N -0.52 -13.73 9.80 -172.08 -1.69 -15.42 16 21 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 24 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 25 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 26 H 0.15 2.08 7.95 -2.91 -0.02 2.06 16 27 H 0.10 2.09 7.87 -2.39 -0.02 2.07 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.02 0.77 7.95 -2.39 -0.02 0.75 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.34 10.83 8.73 -89.69 -0.78 10.04 16 32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 35 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -72.05 304.33 1.28 -70.77 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.21 Total: 12.74 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 3.92 Total: -27.49 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.73 Total: -103.26 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -72.05 1.28 -70.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709722160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.415 kcal (2) G-P(sol) polarization free energy of solvation -72.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds