Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38666 * 120.41690 * 2 1 4 4 C 1.38629 * 118.41839 * 179.70778 * 3 2 1 5 5 C 1.38222 * 119.16236 * 0.51151 * 4 3 2 6 6 C 1.50704 * 119.62039 * 179.75009 * 5 4 3 7 7 C 1.53000 * 109.46831 * 124.72960 * 6 5 4 8 8 N 1.46908 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99837 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47104 * 324.99694 * 9 8 7 11 11 C 1.52997 * 109.47515 * 84.99962 * 9 8 7 12 12 C 1.50708 * 109.46991 * 205.00145 * 9 8 7 13 13 H 1.08000 * 119.99723 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99930 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99779 * 179.97438 * 14 12 9 16 16 Si 1.86795 * 120.00284 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.47308 * 89.99617 * 16 14 12 18 18 H 1.48501 * 109.47369 * 209.99691 * 16 14 12 19 19 H 1.48502 * 109.47235 * 329.99860 * 16 14 12 20 20 N 1.31853 * 120.76394 * 359.48002 * 5 4 3 21 21 C 1.31891 * 121.72578 * 0.27324 * 20 5 4 22 22 H 1.09004 * 109.47051 * 270.01683 * 1 2 3 23 23 H 1.08994 * 109.47547 * 30.01758 * 1 2 3 24 24 H 1.09002 * 109.47215 * 150.02231 * 1 2 3 25 25 H 1.08002 * 120.79385 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.41583 * 180.28313 * 4 3 2 27 27 H 1.09000 * 109.46688 * 4.73040 * 6 5 4 28 28 H 1.09002 * 109.47055 * 244.72937 * 6 5 4 29 29 H 1.08993 * 109.47108 * 60.00380 * 7 6 5 30 30 H 1.09002 * 109.47282 * 299.99838 * 7 6 5 31 31 H 1.00898 * 110.99816 * 56.04433 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 33 33 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 35 35 H 0.96999 * 119.99874 * 180.02562 * 15 14 12 36 36 H 1.07996 * 119.61737 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1958 0.0000 4 6 3.5945 1.1475 0.0062 5 6 4.2255 -0.0823 0.0014 6 6 5.7312 -0.1468 0.0024 7 6 6.2045 -0.9949 1.1846 8 7 7.6722 -1.0573 1.1859 9 6 8.1637 -1.8658 2.3096 10 1 7.5127 -1.7229 3.1721 11 6 8.1667 -3.3432 1.9120 12 6 9.5651 -1.4374 2.6615 13 1 10.0429 -0.6442 2.1057 14 6 10.2371 -2.0582 3.6930 15 7 11.4602 -1.6847 3.9998 16 14 9.4110 -3.4306 4.6538 17 1 9.7062 -4.7345 4.0076 18 1 9.9270 -3.4402 6.0463 19 1 7.9428 -3.2081 4.6716 20 7 3.5255 -1.1996 0.0013 21 6 2.2066 -1.1917 0.0004 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6889 2.1423 0.0004 26 1 4.1734 2.0592 0.0110 27 1 6.1379 0.8605 0.0918 28 1 6.0762 -0.5967 -0.9287 29 1 5.7977 -2.0021 1.0951 30 1 5.8595 -0.5450 2.1156 31 1 8.0735 -0.1317 1.2032 32 1 8.8177 -3.4861 1.0495 33 1 7.1531 -3.6530 1.6575 34 1 8.5318 -3.9431 2.7457 35 1 11.9332 -2.1216 4.7252 36 1 1.6672 -2.1273 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709760567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = 3.642207 kcal Electronic energy + Delta-G solvation = -15725.795947 eV Core-core repulsion = 13208.500157 eV Total energy + Delta-G solvation = -2517.295790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23154 -38.15995 -35.59106 -34.37111 -33.32296 -32.17732 -29.81890 -27.34849 -26.70636 -24.77758 -23.42063 -21.99449 -21.75568 -18.86513 -17.69977 -17.34045 -17.03259 -16.02361 -15.98790 -15.68731 -15.17594 -14.95767 -14.50393 -14.22199 -14.02663 -13.85425 -13.70689 -13.31377 -13.19607 -12.91789 -12.65143 -12.42742 -12.34974 -12.13364 -11.90657 -11.45075 -11.07847 -10.79361 -10.69893 -10.29298 -9.63620 -9.19617 -8.33555 -6.37990 0.16399 0.38817 1.29154 1.33191 1.43925 2.29001 2.81371 3.01297 3.28806 3.54506 3.91793 3.96491 4.05810 4.12906 4.29384 4.35797 4.47355 4.55633 4.68043 4.69640 4.77757 4.84536 4.87166 4.89407 4.94861 5.08005 5.15413 5.23895 5.27401 5.38811 5.47616 5.59520 5.84747 5.96788 6.49239 6.61285 6.81847 7.10831 7.28875 8.82754 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.046231 B = 0.004540 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.505637 B = 6165.474953 C = 6432.312592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.147 4.147 3 C -0.079 4.079 4 C -0.170 4.170 5 C 0.107 3.893 6 C -0.058 4.058 7 C 0.076 3.924 8 N -0.680 5.680 9 C 0.185 3.815 10 H -0.009 1.009 11 C -0.133 4.133 12 C -0.526 4.526 13 H 0.045 0.955 14 C 0.017 3.983 15 N -0.943 5.943 16 Si 0.951 3.049 17 H -0.264 1.264 18 H -0.294 1.294 19 H -0.257 1.257 20 N -0.511 5.511 21 C 0.082 3.918 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.163 0.837 26 H 0.153 0.847 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.339 0.661 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.524 4.718 -8.010 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.149 4.149 3 C -0.105 4.105 4 C -0.189 4.189 5 C -0.030 4.030 6 C -0.096 4.096 7 C -0.054 4.054 8 N -0.311 5.311 9 C 0.076 3.924 10 H 0.008 0.992 11 C -0.191 4.191 12 C -0.564 4.564 13 H 0.063 0.937 14 C -0.181 4.181 15 N -0.583 5.583 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.221 1.221 19 H -0.182 1.182 20 N -0.220 5.220 21 C -0.076 4.076 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.181 0.819 26 H 0.171 0.829 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.156 0.844 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.897 3.371 -8.354 24.606 hybrid contribution -0.156 0.710 1.351 1.535 sum -23.053 4.082 -7.003 24.437 Atomic orbital electron populations 1.20759 0.87846 1.04234 1.03361 1.21295 0.99270 0.93726 1.00571 1.21875 0.93569 0.99454 0.95598 1.22258 0.96158 0.98844 1.01671 1.21313 0.96375 0.89254 0.96090 1.20425 0.88566 1.01394 0.99219 1.21785 0.88045 0.99816 0.95745 1.60475 1.05767 1.18885 1.46015 1.19368 0.93288 0.91809 0.87951 0.99159 1.21973 1.00117 0.96947 1.00048 1.21392 0.99201 1.19678 1.16103 0.93685 1.25753 0.95139 0.99428 0.97804 1.70024 1.12991 1.44089 1.31238 0.85819 0.79550 0.79964 0.76868 1.19033 1.22139 1.18178 1.67426 1.09522 1.32189 1.12890 1.23070 0.89263 0.99099 0.96142 0.90188 0.89951 0.90277 0.81935 0.82889 0.88875 0.89818 0.91867 0.97227 0.84358 0.92794 0.93096 0.94962 0.92326 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.04 71.24 0.72 -0.32 16 2 C -0.15 -2.55 5.90 -19.77 -0.12 -2.67 16 3 C -0.08 -1.35 9.86 22.47 0.22 -1.13 16 4 C -0.17 -3.56 9.71 22.36 0.22 -3.34 16 5 C 0.11 2.90 6.18 42.55 0.26 3.17 16 6 C -0.06 -1.66 5.87 29.85 0.18 -1.48 16 7 C 0.08 2.73 5.34 86.30 0.46 3.20 16 8 N -0.68 -28.78 6.30 -495.44 -3.12 -31.91 16 9 C 0.19 9.14 2.19 44.17 0.10 9.23 16 10 H -0.01 -0.46 6.86 -2.39 -0.02 -0.48 16 11 C -0.13 -6.10 8.89 71.98 0.64 -5.46 16 12 C -0.53 -30.61 9.17 25.60 0.23 -30.38 16 13 H 0.04 2.85 7.86 -2.91 -0.02 2.83 16 14 C 0.02 1.00 5.45 84.65 0.46 1.46 16 15 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 16 Si 0.95 46.32 24.37 68.60 1.67 47.99 16 17 H -0.26 -12.27 6.87 99.48 0.68 -11.59 16 18 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 19 H -0.26 -11.97 6.53 99.48 0.65 -11.32 16 20 N -0.51 -14.83 9.88 -183.88 -1.82 -16.64 16 21 C 0.08 1.82 10.86 84.67 0.92 2.74 16 22 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.08 0.58 8.10 -2.39 -0.02 0.56 16 24 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 25 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 26 H 0.15 2.49 7.95 -2.91 -0.02 2.47 16 27 H 0.09 2.29 7.87 -2.39 -0.02 2.27 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.06 2.42 7.24 -2.39 -0.02 2.41 16 30 H 0.01 0.36 8.06 -2.39 -0.02 0.34 16 31 H 0.34 14.10 8.23 -89.70 -0.74 13.36 16 32 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 2.07 7.45 -2.39 -0.02 2.05 16 34 H 0.03 1.48 3.27 -2.38 -0.01 1.47 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.44 294.31 1.57 -67.87 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.24 Total: 16.74 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.29 Total: -24.97 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.64 Total: -107.63 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 47.99 kcal Total: -69.44 1.57 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709760567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.513 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds