Wall clock time and date at job start Mon Mar 30 2020 04:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63697 * 2 1 4 4 C 1.34845 * 108.21884 * 179.73891 * 3 2 1 5 5 C 1.40893 * 107.42021 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.29600 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46775 * 160.02222 * 6 5 4 8 8 N 1.46843 * 109.46224 * 40.04590 * 6 5 4 9 9 C 1.46852 * 111.20186 * 178.23318 * 8 6 5 10 10 C 1.53038 * 109.51046 * 61.75483 * 9 8 6 11 11 C 1.53116 * 109.28418 * 300.81853 * 10 9 8 12 12 C 1.53038 * 109.46310 * 280.00369 * 6 5 4 13 13 H 1.09002 * 109.50191 * 299.17585 * 12 6 5 14 14 C 1.50702 * 109.50104 * 59.24924 * 12 6 5 15 15 H 1.07995 * 120.00050 * 0.02562 * 14 12 6 16 16 C 1.37884 * 120.00015 * 179.97438 * 14 12 6 17 17 N 1.31512 * 119.99747 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 119.99950 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47510 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46933 * 120.00626 * 18 16 14 21 21 H 1.48502 * 109.47262 * 240.00375 * 18 16 14 22 22 C 1.34856 * 107.41387 * 0.02562 * 5 4 3 23 23 H 1.09005 * 109.46944 * 90.02275 * 1 2 3 24 24 H 1.08992 * 109.47443 * 210.02485 * 1 2 3 25 25 H 1.09002 * 109.47244 * 330.02375 * 1 2 3 26 26 H 1.08000 * 125.88505 * 359.75664 * 3 2 1 27 27 H 1.07995 * 126.29099 * 180.02562 * 4 3 2 28 28 H 1.00900 * 111.00110 * 302.34471 * 8 6 5 29 29 H 1.09000 * 109.46626 * 301.74454 * 9 8 6 30 30 H 1.08990 * 109.45908 * 181.76322 * 9 8 6 31 31 H 1.09003 * 109.49947 * 180.87641 * 10 9 8 32 32 H 1.08998 * 109.50009 * 60.76301 * 10 9 8 33 33 H 1.09006 * 109.52180 * 297.75485 * 11 10 9 34 34 H 1.08992 * 109.52457 * 177.55915 * 11 10 9 35 35 H 0.97001 * 120.00153 * 179.97438 * 17 16 14 36 36 H 1.07998 * 125.88677 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 0.0058 5 6 3.5461 -0.7045 0.0102 6 6 4.7606 -1.5964 0.0178 7 1 4.4803 -2.5888 0.3708 8 7 5.7788 -1.0290 0.9110 9 6 6.9653 -1.8916 0.9795 10 6 7.5961 -2.0045 -0.4102 11 6 6.5711 -2.5913 -1.3846 12 6 5.3257 -1.7006 -1.4006 13 1 4.5749 -2.1356 -2.0604 14 6 5.6961 -0.3267 -1.8968 15 1 5.5443 0.5351 -1.2638 16 6 6.2299 -0.1700 -3.1584 17 7 6.4152 -1.2195 -3.9289 18 14 6.6897 1.5329 -3.7731 19 1 6.3853 2.5374 -2.7225 20 1 8.1405 1.5705 -4.0878 21 1 5.9094 1.8447 -4.9975 22 6 2.2593 -1.1081 0.0063 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.9171 2.1324 -0.0037 27 1 4.4165 1.3437 0.0078 28 1 6.0277 -0.0933 0.6273 29 1 6.6744 -2.8826 1.3279 30 1 7.6879 -1.4607 1.6724 31 1 8.4677 -2.6573 -0.3622 32 1 7.8998 -1.0156 -0.7534 33 1 6.2962 -3.5959 -1.0629 34 1 7.0018 -2.6332 -2.3849 35 1 6.7903 -1.1093 -4.8167 36 1 1.9172 -2.1324 0.0084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709953942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:04 Heat of formation + Delta-G solvation = 48.243450 kcal Electronic energy + Delta-G solvation = -17161.950236 eV Core-core repulsion = 14646.588501 eV Total energy + Delta-G solvation = -2515.361735 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48691 -37.75441 -32.70668 -32.65204 -30.11218 -29.73576 -27.88204 -25.63638 -24.75333 -22.41105 -21.42015 -19.75149 -18.87074 -18.50970 -16.61376 -15.64450 -14.79602 -14.59364 -14.29446 -13.55078 -13.47739 -13.27108 -12.89277 -12.34084 -12.28579 -11.95000 -11.80543 -11.52405 -11.35065 -11.02137 -10.87005 -10.66338 -10.44196 -10.02702 -9.84576 -9.51145 -9.26814 -8.58657 -8.23550 -7.69608 -7.43106 -6.95668 -5.86421 -3.89078 2.95757 3.34402 3.42940 3.46174 3.54810 3.91936 4.52478 5.00308 5.34178 5.42825 5.47945 5.52744 5.59639 5.82749 5.93616 6.13376 6.29362 6.37214 6.40398 6.57389 6.66136 6.73286 6.80785 6.99901 7.12391 7.26884 7.42994 7.52291 7.74027 7.78595 7.92370 8.01443 8.06171 8.12888 8.29783 8.51598 8.60374 9.12454 9.72638 11.19456 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.010785 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.708004 B = 2595.470702 C = 3388.909399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.461 5.461 3 C -0.041 4.041 4 C -0.157 4.157 5 C -0.103 4.103 6 C 0.160 3.840 7 H 0.052 0.948 8 N -0.677 5.677 9 C 0.063 3.937 10 C -0.141 4.141 11 C -0.111 4.111 12 C 0.025 3.975 13 H 0.025 0.975 14 C -0.488 4.488 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.882 3.118 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.037 4.037 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.149 0.851 27 H 0.130 0.870 28 H 0.342 0.658 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.012 0.988 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 1.059 7.576 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.140 5.140 3 C -0.169 4.169 4 C -0.182 4.182 5 C -0.110 4.110 6 C 0.050 3.950 7 H 0.071 0.929 8 N -0.306 5.306 9 C -0.067 4.067 10 C -0.180 4.180 11 C -0.149 4.149 12 C 0.005 3.995 13 H 0.043 0.957 14 C -0.527 4.527 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.711 3.289 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.165 4.165 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.167 0.833 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.701 0.757 7.987 11.121 hybrid contribution 0.646 1.081 -1.608 2.043 sum -7.055 1.838 6.379 9.688 Atomic orbital electron populations 1.21808 0.78736 1.03203 1.02302 1.43653 1.05095 1.06220 1.59000 1.21592 0.90810 0.90751 1.13725 1.20674 0.95009 0.94938 1.07610 1.19292 0.92692 0.94075 1.04966 1.19899 0.88170 0.93605 0.93369 0.92947 1.60892 1.10536 1.06110 1.53074 1.21873 0.91934 0.96946 0.95969 1.22078 0.97887 1.01517 0.96522 1.21575 0.97813 0.94961 1.00529 1.19266 0.93251 0.95927 0.91024 0.95728 1.21206 1.39352 0.92687 0.99435 0.91895 1.24916 0.96268 0.95886 0.97048 1.69887 1.46007 1.28378 1.09130 0.86691 0.77787 0.85594 0.78872 1.19751 1.21464 1.21444 1.21346 0.90269 0.90680 1.14227 0.91869 0.90679 0.90762 0.83340 0.85196 0.83903 0.92749 0.92714 0.94771 0.91424 0.96908 0.89110 0.93487 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 11.12 59.85 0.67 1.56 16 2 N -0.46 -7.48 3.15 -124.53 -0.39 -7.87 16 3 C -0.04 -0.71 11.43 -16.75 -0.19 -0.90 16 4 C -0.16 -3.15 8.75 -39.78 -0.35 -3.50 16 5 C -0.10 -2.14 4.80 -104.82 -0.50 -2.64 16 6 C 0.16 3.44 2.63 -68.88 -0.18 3.26 16 7 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 8 N -0.68 -13.74 6.38 -107.99 -0.69 -14.43 16 9 C 0.06 1.19 6.56 -3.83 -0.03 1.17 16 10 C -0.14 -2.98 5.82 -26.65 -0.16 -3.14 16 11 C -0.11 -2.64 5.32 -26.61 -0.14 -2.79 16 12 C 0.03 0.62 2.13 -91.69 -0.20 0.43 16 13 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.49 -12.81 6.07 -34.44 -0.21 -13.02 16 15 H 0.06 1.63 4.33 -52.49 -0.23 1.40 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 18 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 C -0.04 -0.68 11.35 -16.75 -0.19 -0.87 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.13 2.65 6.50 -52.49 -0.34 2.31 16 28 H 0.34 7.22 6.48 -39.29 -0.25 6.97 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.56 7.35 -51.93 -0.38 1.18 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -29.67 281.38 -8.11 -37.78 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.30 Total: 7.80 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.57 Total: -18.92 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.45 Total: -47.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.67 -8.11 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709953942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.024 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds