Wall clock time and date at job start Mon Mar 30 2020 04:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36341 * 125.63459 * 2 1 4 4 C 1.34859 * 108.21716 * 180.02562 * 3 2 1 5 5 C 1.40884 * 107.41645 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.29046 * 180.02562 * 5 4 3 7 7 H 1.09008 * 110.36686 * 150.87382 * 6 5 4 8 8 C 1.54381 * 110.41387 * 273.22595 * 6 5 4 9 9 H 1.08997 * 110.32082 * 261.52609 * 8 6 5 10 10 C 1.50693 * 110.32222 * 23.73326 * 8 6 5 11 11 H 1.07997 * 120.00450 * 5.31118 * 10 8 6 12 12 C 1.37878 * 119.99953 * 185.30429 * 10 8 6 13 13 N 1.31515 * 119.99853 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00234 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47398 * 89.99623 * 14 12 10 16 16 H 1.48490 * 109.47329 * 210.00241 * 14 12 10 17 17 H 1.48510 * 109.46821 * 330.00027 * 14 12 10 18 18 C 1.54444 * 104.97047 * 142.55186 * 8 6 5 19 19 C 1.54388 * 105.07943 * 0.14984 * 18 8 6 20 20 N 1.48553 * 104.59128 * 336.05003 * 19 18 8 21 21 C 1.46903 * 111.00116 * 159.04110 * 20 19 18 22 22 C 1.34852 * 107.41909 * 0.02562 * 5 4 3 23 23 H 1.08995 * 109.47148 * 269.97515 * 1 2 3 24 24 H 1.09003 * 109.46932 * 29.97484 * 1 2 3 25 25 H 1.09001 * 109.47138 * 149.97239 * 1 2 3 26 26 H 1.08001 * 125.89561 * 359.97438 * 3 2 1 27 27 H 1.08000 * 126.28951 * 180.02562 * 4 3 2 28 28 H 0.97005 * 119.99389 * 179.97438 * 13 12 10 29 29 H 1.08995 * 110.39886 * 241.20421 * 18 8 6 30 30 H 1.09000 * 110.31704 * 119.04717 * 18 8 6 31 31 H 1.08995 * 110.41264 * 217.27114 * 19 18 8 32 32 H 1.09001 * 110.40880 * 94.82990 * 19 18 8 33 33 H 1.09003 * 109.46878 * 304.58016 * 21 20 19 34 34 H 1.09005 * 109.47037 * 64.57680 * 21 20 19 35 35 H 1.08997 * 109.47745 * 184.57888 * 21 20 19 36 36 H 1.08005 * 125.89097 * 180.26141 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5460 -0.7044 -0.0003 6 6 4.7607 -1.5964 -0.0003 7 1 4.5381 -2.5404 0.4973 8 6 5.2428 -1.8497 -1.4448 9 1 4.8756 -2.8114 -1.8032 10 6 4.7802 -0.7399 -2.3532 11 1 4.2711 0.1187 -1.9408 12 6 5.0070 -0.8205 -3.7108 13 7 5.6274 -1.8658 -4.2129 14 14 4.4341 0.5555 -4.8368 15 1 5.5119 1.5686 -4.9683 16 1 4.1124 -0.0016 -6.1751 17 1 3.2225 1.1935 -4.2619 18 6 6.7846 -1.8609 -1.3546 19 6 7.1015 -1.6173 0.1366 20 7 5.9024 -0.9170 0.6645 21 6 5.8158 -1.0494 2.1250 22 6 2.2593 -1.1081 -0.0002 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5143 26 1 1.9171 2.1325 -0.0004 27 1 4.4165 1.3437 -0.0003 28 1 5.7866 -1.9226 -5.1681 29 1 7.2067 -1.0637 -1.9665 30 1 7.1753 -2.8279 -1.6715 31 1 7.9854 -0.9878 0.2395 32 1 7.2466 -2.5655 0.6542 33 1 5.8317 -2.1051 2.3957 34 1 6.6637 -0.5431 2.5866 35 1 4.8880 -0.5982 2.4764 36 1 1.9171 -2.1325 0.0040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:10 Heat of formation + Delta-G solvation = 66.746702 kcal Electronic energy + Delta-G solvation = -17147.801805 eV Core-core repulsion = 14633.242431 eV Total energy + Delta-G solvation = -2514.559374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44529 -37.79919 -32.95214 -32.35720 -30.40849 -29.08080 -27.31740 -25.64070 -24.69704 -23.55495 -20.55531 -19.66372 -19.29134 -18.28626 -16.63775 -15.59090 -14.81251 -14.60173 -14.24162 -14.10587 -13.40669 -13.31854 -12.66090 -12.40754 -12.23146 -11.98648 -11.74749 -11.50389 -11.29689 -10.96758 -10.77658 -10.59375 -10.48000 -10.39175 -10.12238 -9.63546 -9.12084 -8.53975 -8.19657 -7.60211 -7.39812 -7.14274 -5.78930 -3.74473 3.04172 3.43933 3.49869 3.55428 3.63478 3.99031 4.64444 4.92532 5.11278 5.39890 5.54274 5.58476 5.66085 5.79036 5.88776 5.91359 6.02209 6.15655 6.27347 6.35277 6.38981 6.51370 6.61358 6.85056 7.04549 7.14813 7.29069 7.36416 7.60090 7.74045 7.83665 8.01172 8.10238 8.12852 8.20218 8.25287 8.74983 9.32286 9.86867 11.32627 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.013350 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.774539 B = 2096.846032 C = 3331.649012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.462 5.462 3 C -0.046 4.046 4 C -0.149 4.149 5 C -0.089 4.089 6 C 0.133 3.867 7 H 0.027 0.973 8 C 0.056 3.944 9 H 0.032 0.968 10 C -0.482 4.482 11 H 0.080 0.920 12 C 0.053 3.947 13 N -0.903 5.903 14 Si 0.883 3.117 15 H -0.284 1.284 16 H -0.293 1.293 17 H -0.276 1.276 18 C -0.098 4.098 19 C 0.031 3.969 20 N -0.498 5.498 21 C 0.019 3.981 22 C -0.035 4.035 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.254 0.746 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 1.906 9.861 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.141 5.141 3 C -0.174 4.174 4 C -0.174 4.174 5 C -0.096 4.096 6 C 0.024 3.976 7 H 0.045 0.955 8 C 0.037 3.963 9 H 0.050 0.950 10 C -0.520 4.520 11 H 0.098 0.902 12 C -0.146 4.146 13 N -0.543 5.543 14 Si 0.713 3.287 15 H -0.210 1.210 16 H -0.219 1.219 17 H -0.201 1.201 18 C -0.137 4.137 19 C -0.097 4.097 20 N -0.221 5.221 21 C -0.130 4.130 22 C -0.163 4.163 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.151 0.849 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.246 2.415 9.590 11.696 hybrid contribution -0.312 -0.173 -0.641 0.734 sum -6.558 2.242 8.948 11.319 Atomic orbital electron populations 1.21782 0.78863 1.03473 1.01817 1.43604 1.05008 1.06194 1.59276 1.21600 0.90901 0.90700 1.14172 1.20609 0.94820 0.94923 1.07065 1.18916 0.91880 0.94038 1.04751 1.21161 0.87923 0.91086 0.97385 0.95466 1.19438 0.90619 0.97580 0.88641 0.94957 1.21562 1.34838 1.04977 0.90649 0.90223 1.24975 0.95906 0.95435 0.98275 1.69993 1.43374 1.28861 1.12106 0.86719 0.79073 0.82853 0.80104 1.21037 1.21891 1.20109 1.22368 0.99901 0.99995 0.91457 1.23167 0.93453 0.95062 0.98014 1.65137 1.02510 1.51324 1.03135 1.22436 1.01604 0.98366 0.90630 1.21274 0.90311 0.90603 1.14109 0.92167 0.90804 0.90637 0.83506 0.84933 0.93645 0.91415 0.94086 0.91833 0.95815 0.96747 0.92543 0.91897 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 11.12 59.84 0.67 1.65 16 2 N -0.46 -7.85 3.15 -124.53 -0.39 -8.24 16 3 C -0.05 -0.83 11.43 -16.75 -0.19 -1.02 16 4 C -0.15 -3.06 8.30 -39.78 -0.33 -3.39 16 5 C -0.09 -1.87 3.62 -104.82 -0.38 -2.25 16 6 C 0.13 2.90 2.65 -67.22 -0.18 2.72 16 7 H 0.03 0.58 7.97 -51.92 -0.41 0.16 16 8 C 0.06 1.43 2.77 -90.29 -0.25 1.18 16 9 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 10 C -0.48 -13.34 7.61 -34.44 -0.26 -13.61 16 11 H 0.08 2.22 4.49 -52.49 -0.24 1.98 16 12 C 0.05 1.51 5.31 -17.82 -0.09 1.42 16 13 N -0.90 -26.74 12.92 55.43 0.72 -26.02 16 14 Si 0.88 22.40 29.54 -169.99 -5.02 17.37 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 18 C -0.10 -2.35 6.15 -25.25 -0.16 -2.50 16 19 C 0.03 0.62 6.49 -2.18 -0.01 0.61 16 20 N -0.50 -10.10 4.99 -231.71 -1.16 -11.26 16 21 C 0.02 0.32 9.44 60.07 0.57 0.88 16 22 C -0.04 -0.67 11.35 -16.75 -0.19 -0.86 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.13 2.81 8.06 -52.49 -0.42 2.38 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 29 H 0.07 1.77 7.65 -51.93 -0.40 1.38 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 33 H 0.01 0.23 7.97 -51.93 -0.41 -0.19 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.04 7.96 -51.93 -0.41 0.63 16 36 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -31.09 291.56 -7.92 -39.01 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.65 Total: -0.09 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.81 Total: -15.17 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.83 Total: -45.52 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.09 -7.92 -39.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.759 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds