Wall clock time and date at job start Mon Mar 30 2020 03:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38311 * 119.92515 * 2 1 4 4 C 1.38081 * 120.07458 * 180.27984 * 3 2 1 5 5 C 1.38940 * 119.92257 * 359.43770 * 4 3 2 6 6 N 1.39672 * 120.07103 * 180.25996 * 5 4 3 7 7 C 1.46892 * 110.99979 * 296.04495 * 6 5 4 8 8 C 1.46892 * 111.00160 * 60.00282 * 6 5 4 9 9 C 1.50706 * 109.47412 * 169.99594 * 8 6 5 10 10 H 1.07999 * 119.99680 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00205 * 179.97438 * 9 8 6 12 12 N 1.31507 * 120.00329 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99926 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47122 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47575 * 120.00327 * 13 11 9 16 16 H 1.48503 * 109.46871 * 240.00424 * 13 11 9 17 17 C 1.38882 * 119.84964 * 0.28125 * 5 4 3 18 18 C 1.50705 * 120.03691 * 180.02562 * 17 5 4 19 19 N 1.46908 * 109.46678 * 80.00116 * 18 17 5 20 20 C 1.38130 * 119.92768 * 0.02562 * 17 5 4 21 21 H 1.08998 * 109.47133 * 270.27881 * 1 2 3 22 22 H 1.08999 * 109.46716 * 30.28524 * 1 2 3 23 23 H 1.09000 * 109.46703 * 150.27706 * 1 2 3 24 24 H 1.08004 * 119.96553 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.04165 * 179.72174 * 4 3 2 26 26 H 1.08998 * 109.47489 * 60.00612 * 7 6 5 27 27 H 1.09002 * 109.47305 * 180.02562 * 7 6 5 28 28 H 1.08997 * 109.47666 * 300.00007 * 7 6 5 29 29 H 1.08996 * 109.47337 * 289.99580 * 8 6 5 30 30 H 1.08998 * 109.47398 * 49.99673 * 8 6 5 31 31 H 0.97002 * 120.00376 * 179.97438 * 12 11 9 32 32 H 1.09002 * 109.47123 * 199.99628 * 18 17 5 33 33 H 1.08995 * 109.46986 * 320.00656 * 18 17 5 34 34 H 1.00895 * 110.99483 * 179.97438 * 19 18 17 35 35 H 1.00889 * 111.00082 * 303.95536 * 19 18 17 36 36 H 1.07998 * 119.95991 * 179.97438 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0058 5 6 4.2741 0.0000 0.0001 6 7 5.6708 0.0000 -0.0003 7 6 6.1968 0.5959 -1.2356 8 6 6.1975 0.6917 1.1837 9 6 7.6839 0.4623 1.2798 10 1 8.1870 -0.1371 0.5354 11 6 8.4017 1.0184 2.3173 12 7 7.7893 1.7486 3.2234 13 14 10.2442 0.7346 2.4359 14 1 10.6880 -0.1160 1.3024 15 1 10.9506 2.0396 2.3823 16 1 10.5586 0.0538 3.7177 17 6 3.5780 -1.2018 0.0060 18 6 4.3290 -2.5085 0.0130 19 7 4.7809 -2.8061 1.3788 20 6 2.1967 -1.1983 0.0054 21 1 -0.3633 0.0050 1.0276 22 1 -0.3633 0.8874 -0.5183 23 1 -0.3633 -0.8925 -0.5095 24 1 1.6552 2.1330 -0.0004 25 1 4.1160 2.1387 -0.0104 26 1 5.8474 1.6249 -1.3202 27 1 7.2865 0.5829 -1.2099 28 1 5.8472 0.0218 -2.0936 29 1 5.9996 1.7602 1.0984 30 1 5.7113 0.3025 2.0782 31 1 8.2942 2.1396 3.9536 32 1 3.6729 -3.3065 -0.3346 33 1 5.1929 -2.4345 -0.6474 34 1 5.2871 -3.6783 1.4101 35 1 5.3384 -2.0506 1.7479 36 1 1.6550 -2.1325 0.0095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723168140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:07 Heat of formation + Delta-G solvation = 22.070833 kcal Electronic energy + Delta-G solvation = -16588.904747 eV Core-core repulsion = 14072.408082 eV Total energy + Delta-G solvation = -2516.496665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57108 -36.25148 -34.37445 -32.69431 -31.04887 -30.11434 -27.40247 -26.54414 -24.78304 -23.88116 -22.32140 -20.78979 -19.39837 -16.62324 -15.99093 -15.52006 -15.20580 -14.67225 -14.33322 -13.85419 -13.54404 -13.45924 -13.30177 -13.04853 -12.79186 -12.09327 -12.06718 -11.63268 -11.55563 -11.31897 -11.04832 -10.93152 -10.65913 -10.59465 -10.49690 -10.01791 -9.30433 -8.51278 -8.45905 -8.14305 -7.84975 -7.45946 -6.08188 -4.10948 1.75434 1.81580 3.27141 3.35039 3.38829 4.10533 4.37427 4.87291 5.09765 5.17729 5.27495 5.30606 5.45320 5.57583 5.69952 5.73792 5.76745 5.97115 6.03125 6.06747 6.13394 6.23785 6.33571 6.52906 6.65328 6.81666 6.92627 7.04809 7.17434 7.30943 7.42204 7.68124 7.78303 7.97220 8.04817 8.12800 8.56574 8.96440 9.53771 11.02287 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.032529 B = 0.006820 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.556372 B = 4104.581134 C = 4406.167472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.147 4.147 5 C 0.113 3.887 6 N -0.512 5.512 7 C 0.042 3.958 8 C 0.199 3.801 9 C -0.511 4.511 10 H 0.064 0.936 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.067 4.067 18 C 0.117 3.883 19 N -0.847 5.847 20 C -0.102 4.102 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.017 0.983 27 H 0.079 0.921 28 H 0.045 0.955 29 H -0.005 1.005 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.333 0.667 35 H 0.359 0.641 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 -4.214 -7.272 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.133 4.133 4 C -0.167 4.167 5 C 0.018 3.982 6 N -0.234 5.234 7 C -0.105 4.105 8 C 0.076 3.924 9 C -0.550 4.550 10 H 0.082 0.918 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.068 4.068 18 C -0.013 4.013 19 N -0.377 5.377 20 C -0.121 4.121 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.144 0.856 35 H 0.174 0.826 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.439 -4.610 -6.903 13.337 hybrid contribution 1.739 1.007 -0.148 2.015 sum -8.700 -3.603 -7.051 11.764 Atomic orbital electron populations 1.20702 0.91763 1.02032 1.01856 1.19764 0.95539 0.93211 1.02319 1.20816 0.93919 0.97083 1.01527 1.21744 0.94619 0.98837 1.01495 1.19018 0.90572 0.91685 0.96966 1.59875 1.01878 1.56844 1.04786 1.22231 1.01640 0.95827 0.90772 1.19803 0.95310 0.91501 0.85813 1.21148 0.92058 1.31526 1.10237 0.91787 1.24980 0.98717 0.95144 0.95596 1.69969 1.35918 1.33766 1.13706 0.86446 0.85096 0.77872 0.78020 1.19703 1.21102 1.20963 1.19710 0.92880 0.94257 0.99950 1.20388 0.97398 0.92675 0.90859 1.58891 1.49390 1.08464 1.20987 1.20736 0.93199 0.97077 1.01137 0.91648 0.92100 0.92016 0.86872 0.86412 0.96477 0.90239 0.93586 0.98698 0.94975 0.92870 0.92073 0.93838 0.85603 0.82624 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.11 -1.61 5.88 -104.59 -0.62 -2.23 16 3 C -0.11 -1.83 9.69 -39.61 -0.38 -2.22 16 4 C -0.15 -2.74 8.66 -39.38 -0.34 -3.08 16 5 C 0.11 2.21 4.66 -83.79 -0.39 1.82 16 6 N -0.51 -10.92 3.72 -180.34 -0.67 -11.59 16 7 C 0.04 0.82 9.20 60.06 0.55 1.38 16 8 C 0.20 5.09 4.30 -4.98 -0.02 5.07 16 9 C -0.51 -13.88 8.46 -34.44 -0.29 -14.17 16 10 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 13 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.07 -1.18 5.41 -104.42 -0.56 -1.75 16 18 C 0.12 1.93 6.54 -4.97 -0.03 1.90 16 19 N -0.85 -14.57 9.61 -11.40 -0.11 -14.68 16 20 C -0.10 -1.61 9.31 -39.61 -0.37 -1.98 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 25 H 0.12 2.25 7.14 -52.49 -0.37 1.87 16 26 H 0.02 0.32 7.34 -51.93 -0.38 -0.06 16 27 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.00 -0.13 7.47 -51.93 -0.39 -0.52 16 30 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.04 0.75 7.80 -51.93 -0.40 0.35 16 34 H 0.33 4.91 9.08 -39.29 -0.36 4.55 16 35 H 0.36 7.23 8.83 -39.30 -0.35 6.89 16 36 H 0.12 1.59 8.04 -52.49 -0.42 1.16 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -29.08 299.52 -8.22 -37.30 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.48 Total: 8.32 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.19 Total: -14.58 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.04 Total: -51.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.08 -8.22 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723168140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.369 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds