Wall clock time and date at job start Mon Mar 30 2020 04:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46494 * 120.00020 * 89.99804 * 3 2 1 5 5 C 1.50694 * 109.47180 * 90.00049 * 4 3 2 6 6 H 1.08003 * 120.00162 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00236 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00148 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99843 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46968 * 90.00198 * 9 7 5 11 11 H 1.48500 * 109.47239 * 209.99781 * 9 7 5 12 12 H 1.48499 * 109.47185 * 330.00075 * 9 7 5 13 13 C 1.39677 * 120.00191 * 270.00195 * 3 2 1 14 14 C 1.38910 * 120.07545 * 179.71900 * 13 3 2 15 15 C 1.38105 * 119.92104 * 179.76142 * 14 13 3 16 16 C 1.38284 * 120.07769 * 0.52100 * 15 14 13 17 17 C 1.50703 * 119.92643 * 179.71907 * 16 15 14 18 18 N 1.46897 * 109.46910 * 270.01718 * 17 16 15 19 19 C 1.38293 * 120.14883 * 359.73475 * 16 15 14 20 20 C 1.38106 * 120.07244 * 0.02562 * 19 16 15 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 24 24 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 26 26 H 1.09000 * 109.47567 * 210.00198 * 4 3 2 27 27 H 1.09002 * 109.47279 * 329.99646 * 4 3 2 28 28 H 0.96996 * 120.00070 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.03636 * 0.02562 * 14 13 3 30 30 H 1.07995 * 119.96140 * 180.25239 * 15 14 13 31 31 H 1.08991 * 109.46852 * 30.01810 * 17 16 15 32 32 H 1.09000 * 109.46979 * 150.01640 * 17 16 15 33 33 H 1.00902 * 111.00130 * 180.02562 * 18 17 16 34 34 H 1.00906 * 111.00256 * 303.95169 * 18 17 16 35 35 H 1.07999 * 119.96046 * 180.02562 * 19 16 15 36 36 H 1.07997 * 120.03295 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3429 1.2310 1.0958 7 6 4.1493 2.3906 2.8775 8 7 5.3915 2.1844 3.2569 9 14 3.0130 3.4361 3.9287 10 1 2.3082 2.5700 4.9077 11 1 3.8102 4.4569 4.6549 12 1 2.0171 4.1124 3.0591 13 6 2.2511 2.0397 -1.2096 14 6 2.7086 3.3513 -1.2114 15 6 2.9423 3.9977 -2.4092 16 6 2.7113 3.3444 -3.6059 17 6 2.9616 4.0552 -4.9110 18 7 1.7369 4.7473 -5.3343 19 6 2.2509 2.0404 -3.6078 20 6 2.0197 1.3865 -2.4135 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.0955 3.1411 1.1384 27 1 1.5816 1.6878 2.0283 28 1 5.7178 2.5755 4.0824 29 1 2.8852 3.8635 -0.2772 30 1 3.3019 5.0161 -2.4114 31 1 3.7632 4.7820 -4.7810 32 1 3.2495 3.3288 -5.6710 33 1 1.8788 5.2316 -6.2080 34 1 0.9622 4.1041 -5.3995 35 1 2.0718 1.5329 -4.5441 36 1 1.6597 0.3682 -2.4157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723185271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:33 Heat of formation + Delta-G solvation = 7.497957 kcal Electronic energy + Delta-G solvation = -16308.235074 eV Core-core repulsion = 13791.106482 eV Total energy + Delta-G solvation = -2517.128592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53648 -37.93645 -35.21337 -34.72664 -32.56845 -31.41088 -30.76869 -28.48207 -25.39331 -24.91567 -22.96246 -22.74950 -20.81750 -19.06187 -18.29037 -17.05132 -16.85635 -16.15907 -15.70257 -15.59617 -15.22444 -14.77152 -14.68154 -14.55667 -14.17733 -13.89359 -13.45939 -13.26128 -13.13210 -12.96547 -12.62117 -12.41367 -12.10351 -11.98788 -11.86769 -11.73548 -11.37901 -10.82832 -10.44550 -9.69204 -9.49047 -8.34211 -7.91443 -6.39147 0.68892 0.83087 1.32226 1.34665 1.45008 2.29682 2.50563 2.99784 3.07632 3.95818 4.04068 4.11040 4.15100 4.30163 4.41892 4.45660 4.57105 4.69883 4.74399 4.77693 4.83097 4.93718 4.98505 5.04382 5.12241 5.29977 5.36172 5.46612 5.60200 5.63830 5.91044 6.09208 6.20592 6.33679 6.60429 6.70625 6.73137 6.89070 7.26500 8.83302 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.007181 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.082292 B = 3897.979783 C = 4540.974477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.115 3.885 3 N -0.620 5.620 4 C 0.233 3.767 5 C -0.535 4.535 6 H 0.025 0.975 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.249 1.249 13 C 0.215 3.785 14 C -0.219 4.219 15 C -0.061 4.061 16 C -0.164 4.164 17 C 0.119 3.881 18 N -0.855 5.855 19 C -0.064 4.064 20 C -0.215 4.215 21 H 0.086 0.914 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.032 0.968 28 H 0.268 0.732 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.350 0.650 34 H 0.345 0.655 35 H 0.143 0.857 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 0.183 -14.172 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.008 4.008 3 N -0.327 5.327 4 C 0.110 3.890 5 C -0.574 4.574 6 H 0.043 0.957 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.172 1.172 13 C 0.110 3.890 14 C -0.242 4.242 15 C -0.081 4.081 16 C -0.167 4.167 17 C -0.011 4.011 18 N -0.387 5.387 19 C -0.083 4.083 20 C -0.237 4.237 21 H 0.105 0.895 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.286 0.529 -13.178 16.725 hybrid contribution 0.404 -0.227 0.358 0.585 sum -9.882 0.302 -12.820 16.189 Atomic orbital electron populations 1.22118 0.94774 1.02859 1.01731 1.21444 0.94958 0.82127 1.02245 1.46783 1.69404 1.13494 1.03049 1.19291 0.94045 0.93054 0.82604 1.21671 0.97201 1.31869 1.06655 0.95656 1.25844 0.96567 0.97302 0.98772 1.70061 1.17541 1.46581 1.24422 0.85753 0.79204 0.79067 0.79230 1.18492 1.20643 1.17225 1.18182 0.92561 0.91593 0.86643 1.20815 1.09401 0.95366 0.98629 1.20832 0.96844 0.98972 0.91412 1.19651 1.07014 0.95224 0.94769 1.20459 0.92699 0.95933 0.92042 1.58681 1.06654 1.34833 1.38484 1.20947 0.96203 0.93787 0.97400 1.20790 1.11011 1.01187 0.90738 0.89533 0.93599 0.92501 0.92172 0.90302 0.95417 0.94980 0.92318 0.88275 0.86168 0.90962 0.93634 0.83576 0.84228 0.83930 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.12 3.90 5.88 86.38 0.51 4.41 16 3 N -0.62 -26.08 2.59 -701.63 -1.82 -27.90 16 4 C 0.23 11.21 3.99 85.63 0.34 11.55 16 5 C -0.54 -31.14 9.94 25.60 0.25 -30.89 16 6 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 7 C 0.01 0.77 5.47 84.66 0.46 1.23 16 8 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 9 Si 0.94 43.59 27.47 68.60 1.88 45.47 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 13 C 0.21 8.65 6.55 38.21 0.25 8.90 16 14 C -0.22 -9.17 9.21 22.40 0.21 -8.96 16 15 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 16 C -0.16 -4.81 5.40 -19.84 -0.11 -4.92 16 17 C 0.12 2.62 6.91 85.56 0.59 3.21 16 18 N -0.85 -16.64 9.61 -190.02 -1.83 -18.47 16 19 C -0.06 -1.80 9.69 22.25 0.22 -1.59 16 20 C -0.21 -7.02 9.21 22.40 0.21 -6.81 16 21 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 25 H 0.08 2.39 6.20 -2.39 -0.01 2.38 16 26 H 0.03 1.36 5.24 -2.39 -0.01 1.35 16 27 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.10 4.60 6.14 -2.91 -0.02 4.58 16 30 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 32 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.35 4.99 9.08 -89.69 -0.81 4.18 16 34 H 0.34 6.15 8.99 -89.69 -0.81 5.34 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.13 3.76 6.14 -2.91 -0.02 3.74 16 Total: -1.00 -68.45 296.98 1.83 -66.63 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.59 Total: 22.64 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.88 Total: -29.24 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.34 Total: -105.50 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -68.45 1.83 -66.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723185271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.124 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds