Wall clock time and date at job start Mon Mar 30 2020 04:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47151 * 2 1 4 4 C 1.46901 * 111.00312 * 189.73472 * 3 2 1 5 5 C 1.50709 * 109.46649 * 72.08306 * 4 3 2 6 6 H 1.07995 * 120.00161 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99762 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47503 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47373 * 210.00155 * 9 7 5 12 12 H 1.48498 * 109.47130 * 329.99947 * 9 7 5 13 13 C 1.39679 * 110.99960 * 65.78188 * 3 2 1 14 14 C 1.38927 * 120.07658 * 31.29804 * 13 3 2 15 15 C 1.38081 * 119.92895 * 180.27272 * 14 13 3 16 16 C 1.38313 * 120.07137 * 359.72795 * 15 14 13 17 17 C 1.38266 * 120.14887 * 359.97046 * 16 15 14 18 18 C 1.38121 * 120.07515 * 0.05480 * 17 16 15 19 19 C 1.50701 * 120.03806 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46827 * 257.05237 * 19 18 17 21 21 H 1.08998 * 109.47259 * 184.23978 * 1 2 3 22 22 H 1.09004 * 109.47107 * 304.23487 * 1 2 3 23 23 H 1.08995 * 109.47388 * 64.23462 * 1 2 3 24 24 H 1.08997 * 109.47131 * 240.00364 * 2 1 3 25 25 H 1.09004 * 109.47056 * 119.99560 * 2 1 3 26 26 H 1.08991 * 109.47391 * 192.08442 * 4 3 2 27 27 H 1.08997 * 109.47242 * 312.08829 * 4 3 2 28 28 H 0.97000 * 119.99643 * 179.97438 * 8 7 5 29 29 H 1.08003 * 120.03701 * 359.97438 * 14 13 3 30 30 H 1.07998 * 119.96512 * 179.74727 * 15 14 13 31 31 H 1.07999 * 119.92187 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.96259 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.47120 * 17.05172 * 19 18 17 34 34 H 1.09006 * 109.47351 * 137.05142 * 19 18 17 35 35 H 1.00899 * 110.99997 * 183.93945 * 20 19 18 36 36 H 1.00903 * 110.99995 * 307.88485 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4695 1.4308 -0.2319 5 6 3.7593 1.0865 -1.6702 6 1 2.9476 0.8562 -2.3444 7 6 5.0606 1.0644 -2.1251 8 7 6.0491 1.3444 -1.3039 9 14 5.4198 0.6384 -3.9079 10 1 5.4180 1.8793 -4.7236 11 1 6.7503 -0.0143 -4.0026 12 1 4.3766 -0.2888 -4.4151 13 6 1.6822 2.0352 1.1893 14 6 1.5889 1.3156 2.3740 15 6 1.2496 1.9605 3.5468 16 6 1.0081 3.3224 3.5441 17 6 1.1062 4.0427 2.3679 18 6 1.4447 3.4037 1.1911 19 6 1.5508 4.1895 -0.0904 20 7 0.3544 3.9539 -0.9096 21 1 -0.3634 -1.0248 0.0760 22 1 -0.3633 0.5782 0.8496 23 1 -0.3634 0.4467 -0.9254 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 3.8405 2.4328 -0.0163 27 1 3.9648 0.7118 0.4206 28 1 6.9646 1.3285 -1.6239 29 1 1.7769 0.2521 2.3767 30 1 1.1729 1.4010 4.4674 31 1 0.7433 3.8244 4.4629 32 1 0.9174 5.1061 2.3693 33 1 1.6298 5.2518 0.1402 34 1 2.4362 3.8702 -0.6402 35 1 0.4299 4.4187 -1.8020 36 1 0.1870 2.9661 -1.0295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723190712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:37 Heat of formation + Delta-G solvation = 8.895247 kcal Electronic energy + Delta-G solvation = -16916.404893 eV Core-core repulsion = 14399.336891 eV Total energy + Delta-G solvation = -2517.068001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06155 -37.71294 -35.57042 -34.84559 -31.97401 -31.28931 -30.67837 -27.99178 -25.65436 -24.37188 -24.10740 -22.03621 -21.12525 -18.64251 -17.73500 -17.00731 -16.77258 -16.54913 -15.77891 -15.45390 -15.33382 -15.15840 -14.50468 -14.29127 -13.98199 -13.84956 -13.23886 -13.05554 -12.94482 -12.83565 -12.69205 -12.37318 -12.08908 -12.01067 -11.88136 -11.86005 -11.38943 -10.65482 -9.91471 -9.77662 -9.41687 -8.75269 -8.24168 -6.34999 0.52610 0.53654 1.39102 1.39655 1.50997 2.36485 2.88229 3.07989 3.21027 3.93504 4.00822 4.11538 4.21653 4.24521 4.37949 4.51209 4.57330 4.65726 4.78567 4.83661 4.94594 5.00171 5.06783 5.12834 5.21945 5.27258 5.36380 5.56677 5.60925 5.65812 5.74567 6.00557 6.11892 6.24751 6.30147 6.66826 6.79423 6.81438 7.34751 8.86635 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.026670 B = 0.007833 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.602158 B = 3573.795863 C = 3671.573794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 N -0.496 5.496 4 C 0.224 3.776 5 C -0.519 4.519 6 H 0.065 0.935 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.969 3.031 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.098 3.902 14 C -0.181 4.181 15 C -0.108 4.108 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.101 4.101 19 C 0.115 3.885 20 N -0.835 5.835 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.000 1.000 27 H -0.038 1.038 28 H 0.264 0.736 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.015 0.985 35 H 0.342 0.658 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 1.952 5.985 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.215 5.215 4 C 0.100 3.900 5 C -0.558 4.558 6 H 0.083 0.917 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.002 3.998 14 C -0.201 4.201 15 C -0.127 4.127 16 C -0.157 4.157 17 C -0.119 4.119 18 C -0.102 4.102 19 C -0.015 4.015 20 N -0.364 5.364 21 H 0.094 0.906 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.018 0.982 27 H -0.020 1.020 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.154 0.846 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.201 2.572 6.129 13.025 hybrid contribution 1.879 -1.199 -0.926 2.414 sum -9.322 1.373 5.203 10.764 Atomic orbital electron populations 1.21695 0.93128 1.02142 1.01968 1.22135 0.96695 0.88341 1.00348 1.59620 1.15354 1.16161 1.30344 1.19303 0.81039 0.94045 0.95585 1.21383 0.92337 1.46478 0.95567 0.91727 1.25899 0.95963 0.95178 1.02457 1.70097 0.99843 1.50115 1.37254 0.85383 0.77548 0.78553 0.79139 1.19971 1.20899 1.18736 1.19164 0.97692 0.93622 0.89297 1.21683 1.04445 1.00785 0.93229 1.21278 0.98523 0.95309 0.97552 1.21379 1.01679 0.94055 0.98635 1.21199 0.98412 1.00671 0.91627 1.19819 1.01580 0.92620 0.96230 1.20410 0.91698 0.98046 0.91366 1.58992 1.38142 1.18139 1.21079 0.90574 0.93105 0.92369 0.91486 0.95335 0.98183 1.01980 0.92683 0.86475 0.83861 0.83103 0.84159 0.90234 0.96723 0.84595 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.87 71.98 0.71 -3.26 16 2 C 0.05 1.98 5.13 86.30 0.44 2.43 16 3 N -0.50 -21.22 3.30 -699.58 -2.31 -23.53 16 4 C 0.22 11.95 4.17 85.56 0.36 12.30 16 5 C -0.52 -28.91 8.46 25.60 0.22 -28.69 16 6 H 0.06 3.51 7.58 -2.91 -0.02 3.49 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.10 3.83 3.77 38.21 0.14 3.97 16 14 C -0.18 -6.26 8.25 22.40 0.18 -6.08 16 15 C -0.11 -3.02 10.04 22.25 0.22 -2.80 16 16 C -0.14 -3.63 10.04 22.29 0.22 -3.40 16 17 C -0.10 -2.97 9.66 22.25 0.21 -2.76 16 18 C -0.10 -3.64 5.36 -19.73 -0.11 -3.75 16 19 C 0.12 4.14 6.52 85.56 0.56 4.70 16 20 N -0.83 -27.09 9.64 -190.00 -1.83 -28.93 16 21 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.05 1.55 6.65 -2.38 -0.02 1.53 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 2.78 7.12 -2.39 -0.02 2.76 16 25 H 0.03 1.08 5.96 -2.38 -0.01 1.06 16 26 H 0.00 0.01 7.05 -2.39 -0.02 -0.01 16 27 H -0.04 -2.21 8.05 -2.39 -0.02 -2.23 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.12 4.00 5.96 -2.91 -0.02 3.98 16 30 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.14 3.43 8.01 -2.91 -0.02 3.41 16 33 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 34 H 0.01 0.64 6.52 -2.38 -0.02 0.62 16 35 H 0.34 9.88 9.08 -89.69 -0.81 9.07 16 36 H 0.34 11.99 8.33 -89.69 -0.75 11.24 16 Total: -1.00 -63.17 292.83 1.32 -61.85 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.48 Total: 27.10 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.63 Total: -26.67 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.86 Total: -108.16 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -63.17 1.32 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723190712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.745 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds