Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29821 * 120.00331 * 2 1 4 4 N 1.40103 * 119.99763 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99699 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47334 * 329.99256 * 5 4 3 7 7 C 1.53001 * 109.47393 * 89.99641 * 5 4 3 8 8 C 1.50708 * 109.46841 * 209.99506 * 5 4 3 9 9 H 1.08001 * 119.99365 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00080 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99754 * 0.02562 * 10 8 5 12 12 Si 1.86791 * 120.00057 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47326 * 60.00156 * 12 10 8 14 14 H 1.48501 * 109.47298 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47480 * 300.00111 * 12 10 8 16 16 C 1.47344 * 120.00022 * 180.02562 * 2 1 3 17 17 C 1.39896 * 120.15224 * 180.02562 * 16 2 1 18 18 N 1.31879 * 119.82401 * 179.68079 * 17 16 2 19 19 C 1.32290 * 120.13450 * 0.57333 * 18 17 16 20 20 C 1.38387 * 120.30174 * 359.44659 * 19 18 17 21 21 N 1.32036 * 120.16876 * 0.25162 * 20 19 18 22 22 H 1.08999 * 109.47274 * 269.99813 * 1 2 3 23 23 H 1.09006 * 109.47452 * 29.99457 * 1 2 3 24 24 H 1.09005 * 109.47705 * 149.99390 * 1 2 3 25 25 H 0.97000 * 120.00082 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.46754 * 59.99686 * 7 5 4 27 27 H 1.08997 * 109.46980 * 179.97438 * 7 5 4 28 28 H 1.08998 * 109.47117 * 300.00193 * 7 5 4 29 29 H 0.97005 * 119.99712 * 179.97438 * 11 10 8 30 30 H 1.07992 * 120.08281 * 359.97438 * 17 16 2 31 31 H 1.08002 * 119.85338 * 179.72654 * 19 18 17 32 32 H 1.07999 * 119.91570 * 180.27974 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1561 1.1242 0.0000 4 7 1.4556 2.3376 0.0005 5 6 2.1882 3.6063 0.0011 6 1 3.1406 3.4757 0.5150 7 6 2.4433 4.0486 -1.4412 8 6 1.3737 4.6563 0.7119 9 1 0.4069 4.4038 1.1218 10 6 1.8627 5.9391 0.8390 11 7 3.0398 6.2466 0.3394 12 14 0.8535 7.2404 1.7206 13 1 0.6059 6.8107 3.1203 14 1 1.5959 8.5265 1.7211 15 1 -0.4441 7.4188 1.0208 16 6 2.2437 -1.2760 -0.0006 17 6 3.6426 -1.2797 0.0000 18 7 4.2954 -2.4256 0.0058 19 6 3.6302 -3.5690 -0.0003 20 6 2.2463 -3.5717 -0.0013 21 7 1.5806 -2.4315 -0.0012 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8901 -0.5138 24 1 -0.3635 -0.8899 -0.5139 25 1 0.4856 2.3376 0.0005 26 1 1.4909 4.1791 -1.9550 27 1 2.9880 4.9927 -1.4407 28 1 3.0324 3.2891 -1.9553 29 1 3.3837 7.1492 0.4284 30 1 4.1864 -0.3467 0.0004 31 1 4.1695 -4.5048 0.0001 32 1 1.7095 -4.5088 -0.0017 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771891242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = 67.649370 kcal Electronic energy + Delta-G solvation = -15557.695993 eV Core-core repulsion = 12939.635419 eV Total energy + Delta-G solvation = -2618.060575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.85968 -38.67328 -36.38972 -35.17697 -33.78478 -32.05898 -30.13166 -28.53477 -27.28289 -25.58053 -25.18948 -22.51297 -20.87473 -19.07589 -18.37130 -17.80417 -17.35218 -16.85871 -16.02298 -15.93390 -15.59390 -14.84419 -14.69272 -14.51994 -13.86963 -13.66480 -13.20853 -13.04779 -12.88473 -12.71561 -12.50219 -12.39839 -12.26742 -12.13431 -11.93451 -11.26526 -11.02796 -10.60042 -10.38078 -9.98089 -8.54336 -8.18005 -6.35057 -0.42358 0.15276 1.43846 1.45487 1.48163 1.53556 1.97193 2.43671 2.89070 3.11167 3.16327 3.41305 3.55101 3.82761 4.18917 4.37835 4.42715 4.60745 4.67953 4.69033 4.78587 4.97006 5.08596 5.10796 5.28492 5.48627 5.53352 5.74445 5.85161 6.12902 6.32544 6.38183 6.80710 6.84021 7.36075 7.62323 8.86871 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.048151 B = 0.004880 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.368242 B = 5735.791426 C = 6008.134489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.042 3.958 3 N -0.220 5.220 4 N -0.622 5.622 5 C 0.304 3.696 6 H 0.006 0.994 7 C -0.137 4.137 8 C -0.549 4.549 9 H 0.062 0.938 10 C 0.021 3.979 11 N -0.913 5.913 12 Si 0.970 3.030 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.136 3.864 17 C 0.056 3.944 18 N -0.460 5.460 19 C 0.046 3.954 20 C 0.064 3.936 21 N -0.446 5.446 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.379 0.621 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.160 0.840 31 H 0.211 0.789 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -17.132 -0.959 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 N -0.034 5.034 4 N -0.361 5.361 5 C 0.200 3.800 6 H 0.024 0.976 7 C -0.196 4.196 8 C -0.588 4.588 9 H 0.080 0.920 10 C -0.179 4.179 11 N -0.551 5.551 12 Si 0.794 3.206 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.003 4.003 17 C -0.105 4.105 18 N -0.174 5.174 19 C -0.116 4.116 20 C -0.098 4.098 21 N -0.163 5.163 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.218 0.782 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.178 0.822 31 H 0.228 0.772 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.097 -16.316 -0.975 16.479 hybrid contribution -1.301 0.838 0.351 1.586 sum -3.398 -15.478 -0.624 15.859 Atomic orbital electron populations 1.20849 0.90463 1.03425 1.03075 1.22221 0.94752 0.89184 1.08555 1.73989 1.29092 0.93419 1.06927 1.48655 1.06363 0.99720 1.81366 1.18230 0.91416 0.77530 0.92792 0.97598 1.22027 0.99200 1.00899 0.97505 1.21466 1.04838 0.95140 1.37378 0.91960 1.25674 0.96105 1.00202 0.95948 1.70005 1.18723 1.20950 1.45421 0.85438 0.78640 0.77640 0.78862 1.19856 1.20708 1.19249 1.19900 0.91295 0.91312 0.97762 1.23754 0.92329 0.97736 0.96635 1.68451 1.40785 0.99047 1.09109 1.24561 0.94007 0.97929 0.95108 1.24501 0.93586 0.97491 0.94222 1.68435 1.40195 0.98028 1.09635 0.90665 0.92212 0.88889 0.78174 0.95004 0.91127 0.96197 0.92364 0.82237 0.77208 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 9.31 71.23 0.66 -2.78 16 2 C 0.04 1.46 7.10 45.25 0.32 1.79 16 3 N -0.22 -9.05 10.62 -42.90 -0.46 -9.51 16 4 N -0.62 -27.62 5.95 -172.51 -1.03 -28.65 16 5 C 0.30 15.69 3.23 44.25 0.14 15.84 16 6 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 7 C -0.14 -6.81 9.29 71.98 0.67 -6.14 16 8 C -0.55 -29.47 8.74 25.60 0.22 -29.25 16 9 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 10 C 0.02 1.14 5.30 84.65 0.45 1.59 16 11 N -0.91 -51.17 11.32 21.45 0.24 -50.92 16 12 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 C 0.14 4.21 6.73 41.73 0.28 4.49 16 17 C 0.06 1.76 10.77 85.09 0.92 2.67 16 18 N -0.46 -12.36 10.48 -194.06 -2.03 -14.39 16 19 C 0.05 0.81 11.21 84.66 0.95 1.76 16 20 C 0.06 1.11 11.21 84.70 0.95 2.06 16 21 N -0.45 -11.43 9.63 -184.70 -1.78 -13.21 16 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.06 1.75 6.35 -2.38 -0.02 1.74 16 24 H 0.09 2.38 7.62 -2.38 -0.02 2.37 16 25 H 0.38 15.50 6.36 -213.32 -1.36 14.15 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.16 5.38 7.56 -2.91 -0.02 5.36 16 31 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.22 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -63.61 280.50 2.31 -61.30 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.22 Total: 19.24 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.56 Total: -7.97 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.05 Total: -116.69 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -63.61 2.31 -61.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771891242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.949 kcal (2) G-P(sol) polarization free energy of solvation -63.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds