Wall clock time and date at job start Mon Mar 30 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29797 * 120.00038 * 2 1 4 4 N 1.40105 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.46497 * 120.00129 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47078 * 29.99710 * 5 4 3 7 7 C 1.53000 * 109.47021 * 270.00290 * 5 4 3 8 8 C 1.50694 * 109.47115 * 150.00071 * 5 4 3 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 5 4 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.47406 * 120.00057 * 179.97438 * 2 1 3 17 17 C 1.40421 * 121.17050 * 179.71724 * 16 2 1 18 18 C 1.38212 * 117.79322 * 179.78679 * 17 16 2 19 19 N 1.32075 * 120.00294 * 0.50149 * 18 17 16 20 20 N 1.28265 * 122.58952 * 359.73688 * 19 18 17 21 21 C 1.31739 * 122.35217 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.47272 * 90.00256 * 1 2 3 23 23 H 1.09001 * 109.47160 * 210.00919 * 1 2 3 24 24 H 1.09002 * 109.46947 * 330.00190 * 1 2 3 25 25 H 0.96998 * 119.99525 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.47106 * 299.99878 * 7 5 4 27 27 H 1.08998 * 109.47089 * 59.99825 * 7 5 4 28 28 H 1.08995 * 109.47131 * 179.97438 * 7 5 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 30 30 H 1.07999 * 121.10509 * 0.02562 * 17 16 2 31 31 H 1.07997 * 119.99781 * 180.21663 * 18 17 16 32 32 H 1.08000 * 120.20117 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1560 1.1241 0.0000 4 7 1.4554 2.3374 -0.0005 5 6 2.1879 3.6061 -0.0011 6 1 3.1404 3.4756 -0.5149 7 6 2.4429 4.0484 1.4412 8 6 1.3735 4.6560 -0.7119 9 1 0.4071 4.4035 -1.1227 10 6 1.8625 5.9390 -0.8389 11 7 3.0396 6.2464 -0.3393 12 14 0.8533 7.2402 -1.7207 13 1 1.1921 7.2340 -3.1665 14 1 -0.5922 6.9455 -1.5498 15 1 1.1575 8.5756 -1.1467 16 6 2.2440 -1.2766 0.0006 17 6 3.6479 -1.3052 -0.0053 18 6 4.2673 -2.5408 0.0002 19 7 3.5408 -3.6438 0.0006 20 7 2.2583 -3.6262 0.0011 21 6 1.5686 -2.5038 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5140 24 1 -0.3633 0.8900 0.5138 25 1 0.4855 2.3373 -0.0005 26 1 1.4905 4.1790 1.9550 27 1 3.0320 3.2890 1.9553 28 1 2.9883 4.9921 1.4408 29 1 3.3838 7.1489 -0.4290 30 1 4.2246 -0.3921 -0.0101 31 1 5.3454 -2.6044 -0.0006 32 1 0.4889 -2.5296 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901206854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:16 Heat of formation + Delta-G solvation = 75.212164 kcal Electronic energy + Delta-G solvation = -15540.982792 eV Core-core repulsion = 12923.250164 eV Total energy + Delta-G solvation = -2617.732627 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.83620 -38.77753 -36.51759 -34.43039 -33.61127 -32.66657 -30.19682 -28.58792 -27.29528 -25.68179 -25.14534 -22.53555 -20.86821 -19.06376 -18.33372 -17.69335 -17.18862 -16.82218 -16.13273 -15.95129 -15.61601 -14.96594 -14.70219 -14.52852 -14.15785 -13.82165 -13.20962 -12.95879 -12.91162 -12.73099 -12.40426 -12.21503 -12.07743 -11.89694 -11.22770 -11.08390 -11.03398 -10.90426 -10.73187 -10.56817 -8.57604 -8.19639 -6.36399 -0.49598 0.01979 1.43240 1.43898 1.51641 1.54323 2.03691 2.43729 2.74154 3.10336 3.23536 3.39402 3.61186 3.79375 4.00357 4.25448 4.40296 4.53988 4.68181 4.72356 4.87556 4.95222 4.98725 5.09341 5.21026 5.26840 5.34954 5.53051 5.74270 5.84408 6.13132 6.34336 6.80216 7.35083 7.62882 7.74982 8.85338 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.048161 B = 0.004823 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.246135 B = 5804.376534 C = 6076.434965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 N -0.221 5.221 4 N -0.623 5.623 5 C 0.304 3.696 6 H 0.006 0.994 7 C -0.137 4.137 8 C -0.548 4.548 9 H 0.063 0.937 10 C 0.022 3.978 11 N -0.913 5.913 12 Si 0.968 3.032 13 H -0.277 1.277 14 H -0.265 1.265 15 H -0.281 1.281 16 C -0.012 4.012 17 C -0.112 4.112 18 C 0.051 3.949 19 N -0.283 5.283 20 N -0.267 5.267 21 C 0.056 3.944 22 H 0.085 0.915 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.380 0.620 26 H 0.031 0.969 27 H 0.019 0.981 28 H 0.069 0.931 29 H 0.267 0.733 30 H 0.154 0.846 31 H 0.204 0.796 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -11.617 0.935 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 N -0.035 5.035 4 N -0.361 5.361 5 C 0.200 3.800 6 H 0.023 0.977 7 C -0.196 4.196 8 C -0.587 4.587 9 H 0.081 0.919 10 C -0.179 4.179 11 N -0.551 5.551 12 Si 0.793 3.207 13 H -0.203 1.203 14 H -0.190 1.190 15 H -0.207 1.207 16 C -0.025 4.025 17 C -0.143 4.143 18 C -0.112 4.112 19 N -0.125 5.125 20 N -0.107 5.107 21 C -0.111 4.111 22 H 0.103 0.897 23 H 0.123 0.877 24 H 0.080 0.920 25 H 0.219 0.781 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.172 0.828 31 H 0.220 0.780 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.139 -12.524 0.962 12.741 hybrid contribution -1.223 2.437 -0.355 2.750 sum -3.362 -10.086 0.607 10.649 Atomic orbital electron populations 1.21111 0.90028 1.04434 1.03955 1.22558 0.94933 0.89697 1.08620 1.74035 1.29333 0.93503 1.06650 1.48661 1.06393 0.99893 1.81197 1.18204 0.91381 0.77676 0.92704 0.97656 1.22024 0.99186 1.00882 0.97540 1.21495 1.04865 0.95113 1.37228 0.91922 1.25664 0.96088 1.00227 0.95940 1.70005 1.18751 1.20949 1.45404 0.85407 0.79059 0.77895 0.78353 1.20329 1.18967 1.20686 1.19557 0.93874 0.92574 0.96534 1.22771 0.94712 1.00728 0.96117 1.24631 1.03851 0.88373 0.94356 1.72792 1.00644 1.28294 1.10765 1.72815 1.01578 1.26497 1.09818 1.24832 1.03669 0.87345 0.95278 0.89674 0.87667 0.91997 0.78096 0.95013 0.96171 0.91254 0.92391 0.82828 0.77957 0.77946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.08 71.23 0.65 -2.33 16 2 C 0.03 0.88 7.11 45.27 0.32 1.20 16 3 N -0.22 -8.23 10.76 -42.86 -0.46 -8.69 16 4 N -0.62 -25.67 5.95 -172.53 -1.03 -26.70 16 5 C 0.30 15.00 3.23 44.24 0.14 15.14 16 6 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 7 C -0.14 -6.53 9.29 71.98 0.67 -5.86 16 8 C -0.55 -28.38 8.74 25.60 0.22 -28.16 16 9 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 10 C 0.02 1.12 5.30 84.66 0.45 1.57 16 11 N -0.91 -49.93 11.32 21.45 0.24 -49.68 16 12 Si 0.97 41.00 29.54 68.60 2.03 43.03 16 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 16 C -0.01 -0.31 5.92 -19.88 -0.12 -0.42 16 17 C -0.11 -2.82 9.75 22.80 0.22 -2.60 16 18 C 0.05 1.16 11.29 84.65 0.96 2.11 16 19 N -0.28 -7.71 11.48 -57.44 -0.66 -8.37 16 20 N -0.27 -7.25 11.48 -56.40 -0.65 -7.90 16 21 C 0.06 1.28 10.67 85.16 0.91 2.19 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.10 1.59 6.56 -2.39 -0.02 1.57 16 24 H 0.06 1.48 6.35 -2.39 -0.02 1.46 16 25 H 0.38 14.25 6.36 -213.32 -1.36 12.89 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 29 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.15 3.96 7.71 -2.91 -0.02 3.94 16 31 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.20 3.09 6.50 -2.91 -0.02 3.07 16 Total: -1.00 -61.26 278.52 3.68 -57.58 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.22 Total: 17.90 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.42 Total: -17.17 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -2.55 Total: -101.34 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -61.26 3.68 -57.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901206854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.793 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds