Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31003 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48497 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47116 * 299.99901 * 3 2 1 6 6 H 1.48503 * 109.47003 * 60.00225 * 3 2 1 7 7 C 1.39579 * 119.99364 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99176 * 200.00114 * 7 2 1 9 9 N 1.36290 * 120.00351 * 20.00388 * 7 2 1 10 10 C 1.34408 * 124.31227 * 33.57985 * 9 7 2 11 11 O 1.21499 * 126.15007 * 359.92571 * 10 9 7 12 12 C 1.49249 * 107.68808 * 179.97438 * 10 9 7 13 13 O 1.21438 * 127.52517 * 179.97438 * 12 10 9 14 14 C 1.47814 * 104.93945 * 359.97438 * 12 10 9 15 15 C 1.39204 * 133.07478 * 180.02562 * 14 12 10 16 16 C 1.38454 * 119.68909 * 179.97438 * 15 14 12 17 17 F 1.35099 * 120.00044 * 180.02562 * 16 15 14 18 18 C 1.38569 * 119.99405 * 0.28098 * 16 15 14 19 19 C 1.38355 * 120.61792 * 359.47330 * 18 16 15 20 20 C 1.38765 * 120.22003 * 0.49216 * 19 18 16 21 21 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.15358 * 359.97438 * 15 14 12 23 23 H 1.08002 * 119.69496 * 179.72147 * 18 16 15 24 24 H 1.08000 * 119.89116 * 180.30145 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3463 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3963 1.2126 7 6 2.0078 -1.2089 -0.0005 8 1 3.0390 -1.2372 0.3194 9 7 1.3880 -2.3534 -0.4048 10 6 0.4485 -2.4078 -1.3645 11 8 0.0188 -1.4664 -2.0011 12 6 0.0273 -3.8326 -1.5064 13 8 -0.8016 -4.2864 -2.2691 14 6 0.8395 -4.5705 -0.5161 15 6 0.9162 -5.9144 -0.1614 16 6 1.7971 -6.3129 0.8296 17 9 1.8771 -7.6156 1.1785 18 6 2.5930 -5.3747 1.4672 19 6 2.5255 -4.0381 1.1161 20 6 1.6493 -3.6198 0.1248 21 1 -0.4850 0.8401 -0.0004 22 1 0.2914 -6.6428 -0.6568 23 1 3.2753 -5.6902 2.2427 24 1 3.1547 -3.3175 1.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019967107.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -56.559489 kcal Electronic energy + Delta-G solvation = -15839.315053 eV Core-core repulsion = 12826.563565 eV Total energy + Delta-G solvation = -3012.751488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.043 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.47074 -40.93949 -37.81347 -37.38310 -34.92602 -32.87864 -31.03346 -28.87681 -26.83470 -24.48855 -22.01325 -21.32856 -20.07755 -17.85965 -17.39311 -16.45421 -15.96615 -15.53409 -15.13502 -14.77379 -14.57052 -14.37057 -14.11999 -13.56407 -12.96682 -12.82893 -12.59187 -12.04362 -11.81744 -11.37353 -11.18799 -11.11476 -10.59389 -10.51365 -9.94700 -8.93718 -8.88557 -8.42568 -7.38830 -6.68104 -4.40978 0.63966 1.52952 2.30991 3.04234 3.11575 3.16387 3.65394 3.98787 4.08697 4.14836 4.33737 4.74154 4.86455 5.04753 5.11779 5.31197 5.63701 5.86084 6.18902 6.32021 6.44893 6.50283 7.00044 7.14049 7.40085 7.59260 8.14378 8.43064 8.82993 9.38191 10.36868 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.008994 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.937155 B = 3112.481184 C = 3845.355928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.060 3.940 3 Si 0.931 3.069 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.362 5.362 10 C 0.446 3.554 11 O -0.434 6.434 12 C 0.394 3.606 13 O -0.406 6.406 14 C -0.251 4.251 15 C -0.036 4.036 16 C 0.011 3.989 17 F -0.148 7.148 18 C -0.075 4.075 19 C -0.140 4.140 20 C 0.208 3.792 21 H 0.280 0.720 22 H 0.136 0.864 23 H 0.137 0.863 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -6.625 3.527 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.155 4.155 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.124 0.876 9 N -0.068 5.068 10 C 0.232 3.768 11 O -0.306 6.306 12 C 0.266 3.734 13 O -0.277 6.277 14 C -0.256 4.256 15 C -0.056 4.056 16 C -0.010 4.010 17 F -0.127 7.127 18 C -0.095 4.095 19 C -0.162 4.162 20 C 0.104 3.896 21 H 0.090 0.910 22 H 0.154 0.846 23 H 0.155 0.845 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.279 -6.030 2.694 7.869 hybrid contribution 0.336 0.561 0.277 0.710 sum 4.615 -5.469 2.972 7.748 Atomic orbital electron populations 1.69735 1.07029 1.29392 1.37600 1.25513 0.95110 1.00497 0.94367 0.85836 0.79846 0.80528 0.78258 1.18728 1.19962 1.20299 1.19433 0.96694 0.83190 1.50518 0.87555 1.41179 1.33504 1.04403 1.27701 1.20208 0.84465 0.89333 0.82786 1.90667 1.54284 1.41334 1.44332 1.22862 0.79462 0.91235 0.79875 1.90489 1.26320 1.77186 1.33741 1.20332 1.05707 0.93784 1.05790 1.20486 0.96059 0.94413 0.94645 1.17131 1.03667 0.78468 1.01770 1.91439 1.95944 1.33663 1.91658 1.21000 0.97783 0.91963 0.98731 1.20093 1.01848 0.95048 0.99213 1.19074 0.92661 0.86326 0.91497 0.90978 0.84627 0.84529 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.13 11.22 55.53 0.62 -21.51 14 2 C 0.06 1.53 4.78 -17.41 -0.08 1.44 14 3 Si 0.93 19.34 29.60 -169.99 -5.03 14.31 14 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 14 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 14 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 7 C -0.37 -9.24 9.60 -15.07 -0.14 -9.39 14 8 H 0.11 2.40 7.92 -52.49 -0.42 1.99 14 9 N -0.36 -8.81 2.79 -59.26 -0.17 -8.97 14 10 C 0.45 11.50 7.41 -11.84 -0.09 11.41 14 11 O -0.43 -12.53 15.35 5.35 0.08 -12.45 14 12 C 0.39 8.91 7.95 -31.09 -0.25 8.67 14 13 O -0.41 -9.46 18.04 5.40 0.10 -9.36 14 14 C -0.25 -4.93 6.34 -104.82 -0.66 -5.59 14 15 C -0.04 -0.60 10.09 -39.14 -0.39 -1.00 14 16 C 0.01 0.16 7.30 -39.38 -0.29 -0.13 14 17 F -0.15 -2.20 17.27 2.25 0.04 -2.16 14 18 C -0.08 -1.07 10.00 -39.42 -0.39 -1.46 14 19 C -0.14 -2.32 9.83 -39.34 -0.39 -2.71 14 20 C 0.21 4.24 6.68 -83.26 -0.56 3.69 14 21 H 0.28 7.19 8.30 -40.82 -0.34 6.85 14 22 H 0.14 1.99 8.06 -52.49 -0.42 1.57 14 23 H 0.14 1.49 8.06 -52.49 -0.42 1.07 14 24 H 0.14 2.10 8.06 -52.49 -0.42 1.68 14 LS Contribution 235.94 15.07 3.56 3.56 Total: -1.00 -29.09 235.94 -4.87 -33.96 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -0.82 Total: -2.31 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -3.25 Total: 4.94 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.46 Total: -30.48 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.09 -4.87 -33.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019967107.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.600 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds