Wall clock time and date at job start Mon Mar 30 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31003 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48497 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47116 * 299.99901 * 3 2 1 6 6 H 1.48503 * 109.47003 * 60.00225 * 3 2 1 7 7 C 1.39579 * 119.99364 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99176 * 200.00114 * 7 2 1 9 9 N 1.36290 * 120.00351 * 20.00388 * 7 2 1 10 10 C 1.34408 * 124.31227 * 33.57985 * 9 7 2 11 11 O 1.21499 * 126.15007 * 359.92571 * 10 9 7 12 12 C 1.49249 * 107.68808 * 179.97438 * 10 9 7 13 13 O 1.21438 * 127.52517 * 179.97438 * 12 10 9 14 14 C 1.47814 * 104.93945 * 359.97438 * 12 10 9 15 15 C 1.39204 * 133.07478 * 180.02562 * 14 12 10 16 16 C 1.38454 * 119.68909 * 179.97438 * 15 14 12 17 17 F 1.35099 * 120.00044 * 180.02562 * 16 15 14 18 18 C 1.38569 * 119.99405 * 0.28098 * 16 15 14 19 19 C 1.38355 * 120.61792 * 359.47330 * 18 16 15 20 20 C 1.38765 * 120.22003 * 0.49216 * 19 18 16 21 21 H 0.97006 * 119.99793 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.15358 * 359.97438 * 15 14 12 23 23 H 1.08002 * 119.69496 * 179.72147 * 18 16 15 24 24 H 1.08000 * 119.89116 * 180.30145 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3463 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3963 1.2126 7 6 2.0078 -1.2089 -0.0005 8 1 3.0390 -1.2372 0.3194 9 7 1.3880 -2.3534 -0.4048 10 6 0.4485 -2.4078 -1.3645 11 8 0.0188 -1.4664 -2.0011 12 6 0.0273 -3.8326 -1.5064 13 8 -0.8016 -4.2864 -2.2691 14 6 0.8395 -4.5705 -0.5161 15 6 0.9162 -5.9144 -0.1614 16 6 1.7971 -6.3129 0.8296 17 9 1.8771 -7.6156 1.1785 18 6 2.5930 -5.3747 1.4672 19 6 2.5255 -4.0381 1.1161 20 6 1.6493 -3.6198 0.1248 21 1 -0.4850 0.8401 -0.0004 22 1 0.2914 -6.6428 -0.6568 23 1 3.2753 -5.6902 2.2427 24 1 3.1547 -3.3175 1.6173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019967107.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:29 Heat of formation + Delta-G solvation = -74.832119 kcal Electronic energy + Delta-G solvation = -15840.107414 eV Core-core repulsion = 12826.563565 eV Total energy + Delta-G solvation = -3013.543848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.043 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.74867 -42.61304 -39.50944 -39.07783 -36.65850 -34.67819 -32.53316 -30.46834 -28.46372 -26.25261 -23.49572 -22.86182 -21.84777 -19.54226 -18.91623 -18.10580 -17.46958 -17.22344 -16.62771 -16.33122 -16.16799 -16.05984 -15.77283 -15.01721 -14.77435 -14.16896 -14.03777 -13.66336 -13.53370 -13.04806 -12.92766 -12.78624 -12.14044 -12.09274 -11.61508 -10.71009 -10.24745 -10.19814 -9.03833 -8.52368 -6.32450 -0.97963 0.12528 0.76940 1.38770 1.45634 1.57356 1.94867 2.30058 2.37499 2.56446 2.76673 3.02807 3.37114 3.51707 3.66369 4.03275 4.24797 4.41168 4.83027 4.97393 5.09759 5.11682 5.21925 5.56564 5.77611 5.87636 6.32890 6.63060 7.00178 7.58162 8.52168 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.008994 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.937155 B = 3112.481184 C = 3845.355928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.005 3.995 3 Si 0.999 3.001 4 H -0.240 1.240 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.382 4.382 8 H 0.128 0.872 9 N -0.376 5.376 10 C 0.412 3.588 11 O -0.499 6.499 12 C 0.395 3.605 13 O -0.426 6.426 14 C -0.251 4.251 15 C -0.036 4.036 16 C 0.036 3.964 17 F -0.136 7.136 18 C -0.051 4.051 19 C -0.126 4.126 20 C 0.179 3.821 21 H 0.276 0.724 22 H 0.156 0.844 23 H 0.186 0.814 24 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -8.671 5.815 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.205 4.205 3 Si 0.820 3.180 4 H -0.163 1.163 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.507 4.507 8 H 0.145 0.855 9 N -0.083 5.083 10 C 0.200 3.800 11 O -0.376 6.376 12 C 0.269 3.731 13 O -0.299 6.299 14 C -0.256 4.256 15 C -0.055 4.055 16 C 0.016 3.984 17 F -0.115 7.115 18 C -0.070 4.070 19 C -0.147 4.147 20 C 0.079 3.921 21 H 0.086 0.914 22 H 0.173 0.827 23 H 0.204 0.796 24 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.910 -8.182 5.044 11.838 hybrid contribution -0.354 0.859 -0.266 0.967 sum 6.557 -7.323 4.778 10.929 Atomic orbital electron populations 1.69866 1.09003 1.29817 1.39833 1.26594 0.95718 1.04198 0.93946 0.84828 0.79626 0.75931 0.77628 1.16289 1.21663 1.19280 1.19969 0.97596 0.83812 1.49334 0.85498 1.41234 1.33594 1.05705 1.27815 1.20768 0.85753 0.90237 0.83228 1.90591 1.57112 1.43035 1.46829 1.22821 0.79426 0.90596 0.80266 1.90456 1.27390 1.77179 1.34881 1.20130 1.05405 0.94959 1.05108 1.20695 0.96562 0.93248 0.94979 1.17215 1.02048 0.79053 1.00109 1.91496 1.95700 1.32977 1.91314 1.21468 0.96939 0.90234 0.98316 1.20467 1.00247 0.96612 0.97387 1.19456 0.94440 0.84610 0.93570 0.91446 0.82668 0.79628 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.04 11.22 21.76 0.24 -48.79 14 2 C 0.01 0.26 4.78 85.14 0.41 0.67 14 3 Si 1.00 40.12 29.60 68.60 2.03 42.15 14 4 H -0.24 -8.62 7.11 99.48 0.71 -7.91 14 5 H -0.29 -12.29 7.11 99.48 0.71 -11.59 14 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 14 7 C -0.38 -19.03 9.60 84.32 0.81 -18.22 14 8 H 0.13 5.54 7.92 -2.91 -0.02 5.52 14 9 N -0.38 -18.60 2.79 -459.90 -1.29 -19.88 14 10 C 0.41 22.46 7.41 87.26 0.65 23.11 14 11 O -0.50 -31.01 15.35 -3.70 -0.06 -31.07 14 12 C 0.40 18.56 7.95 27.77 0.22 18.78 14 13 O -0.43 -20.68 18.04 -3.50 -0.06 -20.74 14 14 C -0.25 -9.62 6.34 -19.99 -0.13 -9.75 14 15 C -0.04 -1.06 10.09 22.55 0.23 -0.83 14 16 C 0.04 0.91 7.30 22.40 0.16 1.08 14 17 F -0.14 -3.23 17.27 44.97 0.78 -2.45 14 18 C -0.05 -1.12 10.00 22.38 0.22 -0.90 14 19 C -0.13 -3.64 9.83 22.42 0.22 -3.42 14 20 C 0.18 7.04 6.68 38.53 0.26 7.30 14 21 H 0.28 15.03 8.30 -92.70 -0.77 14.26 14 22 H 0.16 4.03 8.06 -2.91 -0.02 4.01 14 23 H 0.19 2.50 8.06 -2.91 -0.02 2.47 14 24 H 0.16 4.04 8.06 -2.91 -0.02 4.02 14 Total: -1.00 -67.62 235.94 5.95 -61.67 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.26 Total: 1.30 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 3.05 Total: 17.82 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.04 Total: -68.68 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.12 Total: -51.81 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -67.62 5.95 -61.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019967107.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.163 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds