Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00231 * 2 1 4 4 H 1.48498 * 109.47335 * 270.00546 * 3 2 1 5 5 H 1.48510 * 109.46921 * 30.00413 * 3 2 1 6 6 H 1.48496 * 109.46891 * 150.00039 * 3 2 1 7 7 C 1.38684 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00470 * 0.02562 * 7 2 1 9 9 O 1.34905 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.35283 * 117.00018 * 179.97438 * 9 7 2 11 11 N 1.32857 * 120.05182 * 179.97438 * 10 9 7 12 12 C 1.32258 * 119.94571 * 180.02562 * 11 10 9 13 13 Cl 1.73600 * 119.97663 * 180.02562 * 12 11 10 14 14 N 1.32434 * 120.05497 * 0.02562 * 12 11 10 15 15 C 1.32423 * 120.10631 * 0.02562 * 14 12 11 16 16 Cl 1.73595 * 119.97408 * 179.97438 * 15 14 12 17 17 N 1.32267 * 120.05416 * 359.97438 * 15 14 12 18 18 H 0.97009 * 119.99609 * 359.97438 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0085 -1.2011 -0.0005 8 1 1.4685 -2.1364 -0.0014 9 8 3.3575 -1.2012 -0.0011 10 6 3.9716 -2.4066 -0.0010 11 7 5.2983 -2.4774 -0.0020 12 6 5.8965 -3.6570 -0.0025 13 17 7.6300 -3.7504 -0.0032 14 7 5.1742 -4.7670 -0.0025 15 6 3.8517 -4.6989 -0.0025 16 17 2.9082 -6.1560 -0.0032 17 7 3.2490 -3.5215 -0.0020 18 1 -0.4850 0.8402 0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033892096.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = 34.721121 kcal Electronic energy + Delta-G solvation = -11939.511084 eV Core-core repulsion = 9253.081003 eV Total energy + Delta-G solvation = -2686.430081 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 234.966 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.16140 -38.31468 -36.98285 -36.63463 -33.29621 -33.04424 -32.38256 -26.35681 -24.71549 -23.61582 -19.44962 -18.79992 -17.45341 -16.14739 -16.00181 -15.00359 -14.47401 -13.87864 -13.76924 -13.15508 -12.73892 -12.69124 -11.53426 -11.45033 -11.24827 -11.05076 -10.77252 -10.25135 -10.04927 -9.88257 -9.42527 -9.14754 -8.98543 -6.85964 -4.54092 1.05499 1.14043 1.25755 1.81901 2.96645 3.03509 3.17803 3.43643 3.91669 3.97926 4.51465 4.69835 4.89782 5.95453 6.71643 6.86174 7.40845 7.58137 8.25391 8.51766 8.98372 10.17163 Molecular weight = 234.97amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.009042 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.079986 B = 3096.049585 C = 4171.287908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.373 4.373 8 H 0.134 0.866 9 O -0.147 6.147 10 C 0.512 3.488 11 N -0.566 5.566 12 C 0.452 3.548 13 Cl 0.033 6.967 14 N -0.599 5.599 15 C 0.456 3.544 16 Cl 0.030 6.970 17 N -0.574 5.574 18 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -5.968 0.016 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.451 4.451 8 H 0.152 0.848 9 O -0.028 6.028 10 C 0.214 3.786 11 N -0.307 5.307 12 C 0.149 3.851 13 Cl 0.061 6.939 14 N -0.340 5.340 15 C 0.153 3.847 16 Cl 0.058 6.942 17 N -0.318 5.318 18 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.480 -5.338 0.019 9.189 hybrid contribution 0.200 0.487 -0.016 0.527 sum 7.680 -4.851 0.003 9.083 Atomic orbital electron populations 1.69601 1.05686 1.29767 1.41836 1.24583 0.95179 0.99235 0.94558 0.86224 0.80721 0.80675 0.79898 1.19003 1.19734 1.17590 1.21222 0.74396 0.98500 1.50958 0.84849 1.83558 1.24985 1.20782 1.73472 1.19999 0.83610 0.84651 0.90350 1.67426 1.09590 1.28138 1.25550 1.22395 0.89577 0.83588 0.89587 1.98419 1.01670 1.97960 1.95897 1.67841 1.06038 1.32223 1.27887 1.22610 0.85346 0.88363 0.88380 1.98423 1.69745 1.30281 1.95748 1.68161 1.41299 0.97596 1.24777 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.12 13.96 55.48 0.77 -21.34 13 2 C 0.07 1.94 5.49 -17.52 -0.10 1.84 13 3 Si 0.90 19.81 28.62 -169.99 -4.86 14.94 13 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 13 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 13 6 H -0.25 -5.67 7.11 56.52 0.40 -5.26 13 7 C -0.37 -10.03 10.10 30.90 0.31 -9.72 13 8 H 0.13 3.79 6.95 -52.48 -0.36 3.43 13 9 O -0.15 -3.79 8.65 1.25 0.01 -3.78 13 10 C 0.51 12.27 8.51 -90.32 -0.77 11.50 13 11 N -0.57 -12.43 10.52 -13.11 -0.14 -12.57 13 12 C 0.45 8.70 8.25 -91.20 -0.75 7.95 13 13 Cl 0.03 0.49 29.30 -51.86 -1.52 -1.03 13 14 N -0.60 -11.54 10.48 -10.06 -0.11 -11.65 13 15 C 0.46 9.12 8.25 -91.21 -0.75 8.37 13 16 Cl 0.03 0.49 29.30 -51.86 -1.52 -1.03 13 17 N -0.57 -13.20 8.82 -13.11 -0.12 -13.32 13 18 H 0.29 6.96 8.31 -40.82 -0.34 6.63 13 LS Contribution 216.83 15.07 3.27 3.27 Total: -1.00 -26.59 216.83 -5.77 -32.35 By element: Atomic # 1 Polarization: -6.30 SS G_CDS: 0.50 Total: -5.80 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: -2.06 Total: 19.95 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.42 Total: -58.88 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.01 Total: -3.78 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.86 Total: 14.94 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -3.04 Total: -2.06 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -26.59 -5.77 -32.35 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033892096.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.075 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds