Wall clock time and date at job start Mon Mar 30 2020 03:03:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86801 * 120.00231 * 2 1
4 4 H 1.48498 * 109.47335 * 270.00546 * 3 2 1
5 5 H 1.48510 * 109.46921 * 30.00413 * 3 2 1
6 6 H 1.48496 * 109.46891 * 150.00039 * 3 2 1
7 7 C 1.38684 * 119.99527 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00470 * 0.02562 * 7 2 1
9 9 O 1.34905 * 119.99892 * 179.97438 * 7 2 1
10 10 C 1.35283 * 117.00018 * 179.97438 * 9 7 2
11 11 N 1.32857 * 120.05182 * 179.97438 * 10 9 7
12 12 C 1.32258 * 119.94571 * 180.02562 * 11 10 9
13 13 Cl 1.73600 * 119.97663 * 180.02562 * 12 11 10
14 14 N 1.32434 * 120.05497 * 0.02562 * 12 11 10
15 15 C 1.32423 * 120.10631 * 0.02562 * 14 12 11
16 16 Cl 1.73595 * 119.97408 * 179.97438 * 15 14 12
17 17 N 1.32267 * 120.05416 * 359.97438 * 15 14 12
18 18 H 0.97009 * 119.99609 * 359.97438 * 1 2 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4467 2.6527 0.7002
6 1 3.5467 1.4400 0.7000
7 6 2.0085 -1.2011 -0.0005
8 1 1.4685 -2.1364 -0.0014
9 8 3.3575 -1.2012 -0.0011
10 6 3.9716 -2.4066 -0.0010
11 7 5.2983 -2.4774 -0.0020
12 6 5.8965 -3.6570 -0.0025
13 17 7.6300 -3.7504 -0.0032
14 7 5.1742 -4.7670 -0.0025
15 6 3.8517 -4.6989 -0.0025
16 17 2.9082 -6.1560 -0.0032
17 7 3.2490 -3.5215 -0.0020
18 1 -0.4850 0.8402 0.0004
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000033892096.mol2 18
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:25
Heat of formation + Delta-G solvation = 34.721121 kcal
Electronic energy + Delta-G solvation = -11939.511084 eV
Core-core repulsion = 9253.081003 eV
Total energy + Delta-G solvation = -2686.430081 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 234.966 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-41.16140 -38.31468 -36.98285 -36.63463 -33.29621 -33.04424 -32.38256 -26.35681
-24.71549 -23.61582 -19.44962 -18.79992 -17.45341 -16.14739 -16.00181 -15.00359
-14.47401 -13.87864 -13.76924 -13.15508 -12.73892 -12.69124 -11.53426 -11.45033
-11.24827 -11.05076 -10.77252 -10.25135 -10.04927 -9.88257 -9.42527 -9.14754
-8.98543 -6.85964 -4.54092 1.05499 1.14043 1.25755 1.81901 2.96645
3.03509 3.17803 3.43643 3.91669 3.97926 4.51465 4.69835 4.89782
5.95453 6.71643 6.86174 7.40845 7.58137 8.25391 8.51766 8.98372
10.17163
Molecular weight = 234.97amu
Principal moments of inertia in cm(-1)
A = 0.025798 B = 0.009042 C = 0.006711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.079986 B = 3096.049585 C = 4171.287908
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.835 5.835
2 C 0.075 3.925
3 Si 0.902 3.098
4 H -0.265 1.265
5 H -0.272 1.272
6 H -0.252 1.252
7 C -0.373 4.373
8 H 0.134 0.866
9 O -0.147 6.147
10 C 0.512 3.488
11 N -0.566 5.566
12 C 0.452 3.548
13 Cl 0.033 6.967
14 N -0.599 5.599
15 C 0.456 3.544
16 Cl 0.030 6.970
17 N -0.574 5.574
18 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.729 -5.968 0.016 9.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.469 5.469
2 C -0.136 4.136
3 Si 0.725 3.275
4 H -0.190 1.190
5 H -0.197 1.197
6 H -0.176 1.176
7 C -0.451 4.451
8 H 0.152 0.848
9 O -0.028 6.028
10 C 0.214 3.786
11 N -0.307 5.307
12 C 0.149 3.851
13 Cl 0.061 6.939
14 N -0.340 5.340
15 C 0.153 3.847
16 Cl 0.058 6.942
17 N -0.318 5.318
18 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 7.480 -5.338 0.019 9.189
hybrid contribution 0.200 0.487 -0.016 0.527
sum 7.680 -4.851 0.003 9.083
Atomic orbital electron populations
1.69601 1.05686 1.29767 1.41836 1.24583 0.95179 0.99235 0.94558
0.86224 0.80721 0.80675 0.79898 1.19003 1.19734 1.17590 1.21222
0.74396 0.98500 1.50958 0.84849 1.83558 1.24985 1.20782 1.73472
1.19999 0.83610 0.84651 0.90350 1.67426 1.09590 1.28138 1.25550
1.22395 0.89577 0.83588 0.89587 1.98419 1.01670 1.97960 1.95897
1.67841 1.06038 1.32223 1.27887 1.22610 0.85346 0.88363 0.88380
1.98423 1.69745 1.30281 1.95748 1.68161 1.41299 0.97596 1.24777
0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -22.12 13.96 55.48 0.77 -21.34 13
2 C 0.07 1.94 5.49 -17.52 -0.10 1.84 13
3 Si 0.90 19.81 28.62 -169.99 -4.86 14.94 13
4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 13
5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 13
6 H -0.25 -5.67 7.11 56.52 0.40 -5.26 13
7 C -0.37 -10.03 10.10 30.90 0.31 -9.72 13
8 H 0.13 3.79 6.95 -52.48 -0.36 3.43 13
9 O -0.15 -3.79 8.65 1.25 0.01 -3.78 13
10 C 0.51 12.27 8.51 -90.32 -0.77 11.50 13
11 N -0.57 -12.43 10.52 -13.11 -0.14 -12.57 13
12 C 0.45 8.70 8.25 -91.20 -0.75 7.95 13
13 Cl 0.03 0.49 29.30 -51.86 -1.52 -1.03 13
14 N -0.60 -11.54 10.48 -10.06 -0.11 -11.65 13
15 C 0.46 9.12 8.25 -91.21 -0.75 8.37 13
16 Cl 0.03 0.49 29.30 -51.86 -1.52 -1.03 13
17 N -0.57 -13.20 8.82 -13.11 -0.12 -13.32 13
18 H 0.29 6.96 8.31 -40.82 -0.34 6.63 13
LS Contribution 216.83 15.07 3.27 3.27
Total: -1.00 -26.59 216.83 -5.77 -32.35
By element:
Atomic # 1 Polarization: -6.30 SS G_CDS: 0.50 Total: -5.80 kcal
Atomic # 6 Polarization: 22.01 SS G_CDS: -2.06 Total: 19.95 kcal
Atomic # 7 Polarization: -59.30 SS G_CDS: 0.42 Total: -58.88 kcal
Atomic # 8 Polarization: -3.79 SS G_CDS: 0.01 Total: -3.78 kcal
Atomic # 14 Polarization: 19.81 SS G_CDS: -4.86 Total: 14.94 kcal
Atomic # 17 Polarization: 0.98 SS G_CDS: -3.04 Total: -2.06 kcal
Total LS contribution 3.27 Total: 3.27 kcal
Total: -26.59 -5.77 -32.35 kcal
The number of atoms in the molecule is 18
The average number of expansion shells was 13.00
The maximum number of expansion shells was 13
The minimum number of expansion shells was 13
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000033892096.mol2 18
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.075 kcal
(2) G-P(sol) polarization free energy of solvation -26.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.487 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.354 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds